SRR3553383_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553383_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426023
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11201	2.6292007708504	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCC	6065	1.4236320574241297	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGT	6012	1.4111914145480409	No Hit
AATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT	4448	1.044075085147985	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2484	0.5830671114000887	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2147	0.5039634010370333	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	2145	0.503493942815294	TruSeq Adapter, Index 14 (95% over 22bp)
AATGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTT	1227	0.2880126190370003	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1202	0.2821443912652603	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCT	1152	0.2704079357217803	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTAT	872	0.20468378467829199	No Hit
AACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTG	851	0.19975447335003038	TruSeq Adapter, Index 15 (95% over 22bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	777	0.18238451914567994	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAGTATC	730	0.1713522509348087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGGT	30	2.1622727E-6	45.000004	41
ATCTCGC	30	2.1622727E-6	45.000004	29
GTCGAGC	30	2.1622727E-6	45.000004	27
ATAGGCG	30	2.1622727E-6	45.000004	26
CAACGAC	30	2.1622727E-6	45.000004	12
CGTTGTC	30	2.1622727E-6	45.000004	45
CTATACG	30	2.1622727E-6	45.000004	1
GACCGAG	30	2.1622727E-6	45.000004	1
CTCCACG	30	2.1622727E-6	45.000004	1
CGTTACT	30	2.1622727E-6	45.000004	31
TGCGAAG	30	2.1622727E-6	45.000004	1
CGGGCAC	30	2.1622727E-6	45.000004	6
GAGCCGA	30	2.1622727E-6	45.000004	41
ACAGACG	30	2.1622727E-6	45.000004	1
TTCGGTG	30	2.1622727E-6	45.000004	30
ACCGTTG	30	2.1622727E-6	45.000004	43
TCGAGCG	30	2.1622727E-6	45.000004	1
TCGGTGA	30	2.1622727E-6	45.000004	31
TCGAACG	30	2.1622727E-6	45.000004	1
TACCGTG	30	2.1622727E-6	45.000004	27