##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553383_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 426023 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.477727728315138 31.0 31.0 34.0 30.0 34.0 2 31.70048565453039 31.0 31.0 34.0 30.0 34.0 3 31.836276445168455 31.0 31.0 34.0 30.0 34.0 4 35.55686899533593 37.0 35.0 37.0 33.0 37.0 5 35.30616656847165 37.0 35.0 37.0 33.0 37.0 6 32.51176814397345 37.0 35.0 37.0 26.0 37.0 7 34.03261326266422 37.0 35.0 37.0 26.0 37.0 8 35.151123296160065 37.0 35.0 37.0 32.0 37.0 9 37.02953126943851 39.0 37.0 39.0 34.0 39.0 10 36.50592808369501 38.0 35.0 39.0 32.0 39.0 11 36.594362276215136 38.0 35.0 39.0 32.0 39.0 12 36.50139311727301 38.0 35.0 39.0 32.0 39.0 13 36.585942543008244 39.0 35.0 39.0 32.0 39.0 14 37.63855472591855 39.0 37.0 41.0 32.0 41.0 15 37.786666447586164 39.0 37.0 41.0 33.0 41.0 16 37.58434169047211 39.0 36.0 41.0 32.0 41.0 17 37.56922748302322 39.0 36.0 41.0 32.0 41.0 18 37.348345042403814 39.0 36.0 40.0 32.0 41.0 19 37.23628301758356 39.0 35.0 41.0 32.0 41.0 20 37.26343178654673 39.0 35.0 40.0 32.0 41.0 21 37.28248709576713 39.0 35.0 40.0 32.0 41.0 22 37.14150644448774 39.0 35.0 40.0 31.0 41.0 23 37.01426214077644 39.0 35.0 40.0 31.0 41.0 24 36.947385469798576 39.0 35.0 40.0 31.0 41.0 25 36.99831933956617 39.0 35.0 40.0 31.0 41.0 26 36.87850186492279 39.0 35.0 40.0 31.0 41.0 27 36.81490670691488 39.0 35.0 40.0 31.0 41.0 28 36.748452548336594 39.0 35.0 40.0 31.0 41.0 29 36.56905378348117 39.0 35.0 40.0 30.0 41.0 30 36.664079169434515 39.0 35.0 40.0 31.0 41.0 31 36.176175934163176 38.0 35.0 40.0 30.0 41.0 32 36.228297533231775 38.0 35.0 40.0 30.0 41.0 33 36.26100468754034 38.0 35.0 40.0 30.0 41.0 34 36.069334284768665 38.0 35.0 40.0 30.0 41.0 35 36.163026409372264 38.0 35.0 40.0 30.0 41.0 36 36.055950030866875 38.0 35.0 40.0 30.0 41.0 37 35.98061137544217 38.0 35.0 40.0 30.0 41.0 38 35.98063954293548 38.0 35.0 40.0 30.0 41.0 39 35.748701361194115 38.0 35.0 40.0 29.0 41.0 40 35.65976719566784 38.0 35.0 40.0 28.0 41.0 41 35.64788990265784 38.0 35.0 40.0 28.0 41.0 42 35.63614171065881 38.0 35.0 40.0 28.0 41.0 43 35.654490485255494 38.0 35.0 40.0 28.0 41.0 44 35.509087537527314 38.0 35.0 40.0 27.0 41.0 45 35.306206472420506 38.0 34.0 40.0 26.0 41.0 46 34.93609969414797 38.0 33.0 40.0 25.0 41.0 47 34.98482006840006 38.0 34.0 40.0 26.0 41.0 48 34.955387385188125 38.0 34.0 40.0 26.0 41.0 49 34.887780706675464 37.0 34.0 40.0 26.0 41.0 50 34.73646493264448 37.0 33.0 40.0 25.0 41.0 51 33.49827826197177 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 1.0 12 1.0 13 9.0 14 5.0 15 20.0 16 39.0 17 96.0 18 199.0 19 455.0 20 956.0 21 1587.0 22 2081.0 23 2507.0 24 2892.0 25 3271.0 26 3611.0 27 4340.0 28 5598.0 29 7291.0 30 9388.0 31 12741.0 32 17054.0 33 22330.0 34 30767.0 35 42449.0 36 44850.0 37 57554.0 38 76710.0 39 77200.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.536431131652517 40.375754360680055 20.507578229344425 22.580236278323003 2 20.265103057816127 38.18127190316016 19.879443128657375 21.674181910366343 3 17.932130424883162 32.70339864279628 26.059391159632227 23.305079772688327 4 22.523666562603427 33.81624935742906 18.425531015931064 25.234553064036447 5 16.85801001354387 41.28251291596933 17.173720667663485 24.685756402823323 6 16.531032362102515 43.12490170718482 21.6683136825946 18.67575224811806 7 77.1108602117726 14.042199599552138 5.072965544113815 3.7739746445614437 8 78.29694640899669 8.737321693899155 3.589008105196198 9.37672379190795 9 74.849245228544 13.063613936336772 7.335519443785898 4.751621391333332 10 30.19156242738068 45.92193379230699 12.409423904343193 11.477079875969137 11 19.648469683561686 28.999373273273974 32.413038732650584 18.939118310513752 12 22.871065646690436 26.848550430375823 34.12656124199867 16.15382268093507 13 22.68070033777519 30.631444781150314 26.55279175068013 20.135063130394368 14 16.326348577424223 31.205592186337356 31.460977458963484 21.007081777274937 15 15.750323339350222 34.241109048103034 26.97647779579976 23.032089816746986 16 17.873448147165764 34.063184382063874 29.483854158108834 18.579513312661522 17 17.26409137534828 34.15637183907911 27.817512200045535 20.762024585527072 18 18.21028442126364 33.78456092746166 26.669217389671452 21.335937261603245 19 18.211927525039727 35.189414656016226 29.8516746748415 16.746983144102547 20 19.24121467620293 37.52168310161658 26.04530741298005 17.19179480920044 21 20.226842212744383 32.29215324055274 28.03393244026731 19.447072106435566 22 19.449654126655133 34.72113007983137 26.448337296343155 19.38087849717034 23 19.40646397025513 33.59912492987468 24.865793630860306 22.12861746900989 24 15.492121317393662 38.255446302194954 26.85840905303235 19.39402332737904 25 16.85824474265474 33.78057053257688 26.791041798212774 22.570142926555608 26 19.620302190257334 37.5261429547231 22.425549794259933 20.42800506075963 27 16.69323017771341 34.318100196468265 27.760942484325962 21.227727141492363 28 18.615661595735443 33.03201939801372 26.452797149449676 21.899521856801158 29 18.606037702189788 37.240947085016536 24.973769021860324 19.179246190933352 30 21.907972104792464 32.04498348680705 23.96349492867756 22.083549479722926 31 20.4683784678292 35.682580517953255 22.36334657987949 21.48569443433805 32 19.901507665079116 33.88643336157907 23.68064635007969 22.531412623262124 33 21.46409935613805 32.489090964572334 23.348739387310076 22.69807029197954 34 17.337326857939594 34.301434429596526 26.565232393556215 21.796006318907665 35 19.892822687976942 34.8359126150466 23.851998601014497 21.419266095961955 36 18.77598157845938 35.18260751180101 26.38848137307141 19.65292953666821 37 20.149616335268284 35.59666966337498 24.39187555601458 19.861838445342155 38 21.091114798966252 32.73250505254411 26.67062576433667 19.50575438415297 39 18.90602150588114 34.06717477694866 27.115437429434564 19.91136628773564 40 21.796945235351142 34.9687692917988 24.41041915577328 18.823866317076778 41 17.567361386591802 31.279531856261283 30.94574706060471 20.207359696542206 42 19.405994512033388 34.31364034336175 24.761339176523332 21.519025968081536 43 19.047093701513766 32.019163284611395 27.82338042781728 21.11036258605756 44 20.681747229609666 29.518594066517533 25.92183990066264 23.877818803210154 45 22.273445330416433 33.04234747889198 25.155449353673394 19.52875783701819 46 17.765238027054878 33.197268692065926 30.253061454428515 18.784431826450685 47 20.106895637090016 32.913715926135445 25.578665940571284 21.400722496203255 48 18.57458400133326 30.74951352391772 31.197376667456922 19.478525807292094 49 21.08078671808799 31.076021717137337 26.84056964060626 21.002621924168412 50 19.57664257563559 30.176539764285025 26.18567542128007 24.061142238799313 51 17.955133877748384 28.319832497306486 30.375355321191577 23.349678303753553 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 12794.0 1 9692.5 2 6591.0 3 4015.5 4 1440.0 5 1140.0 6 840.0 7 927.5 8 1015.0 9 1149.5 10 1284.0 11 1585.5 12 1887.0 13 2100.5 14 2314.0 15 2264.0 16 2214.0 17 2401.0 18 2588.0 19 2524.5 20 2461.0 21 2324.5 22 2188.0 23 3115.5 24 4043.0 25 4363.5 26 5573.5 27 6463.0 28 7489.5 29 8516.0 30 9340.0 31 10164.0 32 11969.5 33 13775.0 34 16191.0 35 18607.0 36 18697.5 37 18788.0 38 18095.0 39 17402.0 40 17477.5 41 17553.0 42 20783.0 43 24013.0 44 31624.0 45 39235.0 46 40482.0 47 41729.0 48 39573.5 49 37418.0 50 33960.5 51 30503.0 52 26890.5 53 23278.0 54 20922.5 55 18567.0 56 18044.0 57 17521.0 58 14055.5 59 10590.0 60 9757.0 61 8924.0 62 7700.0 63 6476.0 64 5369.5 65 4263.0 66 3252.5 67 2242.0 68 1903.5 69 1565.0 70 1228.0 71 891.0 72 784.0 73 677.0 74 471.0 75 193.5 76 122.0 77 80.0 78 38.0 79 34.5 80 31.0 81 41.0 82 51.0 83 28.5 84 6.0 85 5.5 86 5.0 87 2.5 88 0.0 89 0.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 426023.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.60858776672658 #Duplication Level Percentage of deduplicated Percentage of total 1 73.34542233442166 18.049272628042427 2 10.603359298456422 5.2186739583640245 3 4.188304016798145 3.092047409733318 4 2.2822596520115694 2.246527478119422 5 1.4682286858268219 1.8065517238397482 6 1.0165676862200732 1.5009777076298902 7 0.7444701275123513 1.2824250930815675 8 0.5640810043799585 1.1104989523061988 9 0.4803654913291283 1.0639004718131628 >10 4.009357086162104 21.92669639340473 >50 0.8132327552807673 14.194166758891006 >100 0.4703993388388752 18.376192668985162 >500 0.003986435074905721 0.7921618396436856 >1k 0.006976261381085013 3.6309461411531783 >5k 0.0019932175374528607 2.9619004759680467 >10k+ 9.966087687264303E-4 2.747060299024434 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11201 2.6292007708504 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCC 6065 1.4236320574241297 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGT 6012 1.4111914145480409 No Hit AATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT 4448 1.044075085147985 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2484 0.5830671114000887 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2147 0.5039634010370333 No Hit CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT 2145 0.503493942815294 TruSeq Adapter, Index 14 (95% over 22bp) AATGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTT 1227 0.2880126190370003 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1202 0.2821443912652603 No Hit AATGATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCT 1152 0.2704079357217803 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTAT 872 0.20468378467829199 No Hit AACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTG 851 0.19975447335003038 TruSeq Adapter, Index 15 (95% over 22bp) AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 777 0.18238451914567994 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAGTATC 730 0.1713522509348087 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6504343662196642 0.0 2 0.0 0.0 0.0 0.8145100147175153 0.0 3 0.0 0.0 0.0 1.215192606971924 0.0 4 0.0 0.0 0.0 3.139736586991782 0.0 5 0.0 0.0 0.0 3.3258767719113758 0.0 6 0.0 0.0 0.0 4.307044455346308 0.0 7 0.0 0.0 0.0 5.167796104905134 0.0 8 0.0 0.0 0.0 5.772458294505226 0.0 9 0.0 0.0 0.0 8.244860019294732 0.0 10 0.0 0.0 0.0 9.509111010438403 0.0 11 0.0 0.0 0.0 12.261779293606214 0.0 12 0.0 0.0 0.0 12.907049619386747 0.0 13 0.0 0.0 0.0 13.207033423078096 0.0 14 0.0 0.0 0.0 13.676726373928169 0.0 15 0.0 0.0 0.0 13.92906016811299 0.0 16 0.0 0.0 0.0 14.342887590576096 0.0 17 0.0 0.0 0.0 14.878774150691395 0.0 18 0.0 0.0 0.0 15.871913018780676 0.0 19 0.0 0.0 0.0 16.208045105545946 0.0 20 0.0 0.0 0.0 16.560373500961216 0.0 21 0.0 0.0 0.0 16.897209775059093 0.0 22 0.0 0.0 0.0 17.285686453548283 0.0 23 0.0 0.0 0.0 17.667121258711383 0.0 24 0.0 0.0 0.0 17.937059736211424 0.0 25 0.0 0.0 0.0 18.160756578870156 0.0 26 0.0 0.0 0.0 18.356285928224533 0.0 27 0.0 0.0 0.0 18.597352725087614 0.0 28 0.0 0.0 0.0 18.844757207944173 0.0 29 0.0 0.0 0.0 19.14004642941813 0.0 30 0.0 0.0 0.0 19.503172363933402 0.0 31 0.0 0.0 0.0 19.753393596120397 0.0 32 0.0 0.0 0.0 20.000798078976956 0.0 33 0.0 0.0 0.0 20.241864875840037 0.0 34 0.0 0.0 0.0 20.4923208371379 0.0 35 0.0 0.0 0.0 20.77469995751403 0.0 36 0.0 0.0 0.0 21.025390647922766 0.0 37 0.0 0.0 0.0 21.285235773655412 0.0 38 0.0 0.0 0.0 21.55705208404241 0.0 39 2.3472911086960094E-4 0.0 0.0 21.837788100642452 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGGT 30 2.1622727E-6 45.000004 41 ATCTCGC 30 2.1622727E-6 45.000004 29 GTCGAGC 30 2.1622727E-6 45.000004 27 ATAGGCG 30 2.1622727E-6 45.000004 26 CAACGAC 30 2.1622727E-6 45.000004 12 CGTTGTC 30 2.1622727E-6 45.000004 45 CTATACG 30 2.1622727E-6 45.000004 1 GACCGAG 30 2.1622727E-6 45.000004 1 CTCCACG 30 2.1622727E-6 45.000004 1 CGTTACT 30 2.1622727E-6 45.000004 31 TGCGAAG 30 2.1622727E-6 45.000004 1 CGGGCAC 30 2.1622727E-6 45.000004 6 GAGCCGA 30 2.1622727E-6 45.000004 41 ACAGACG 30 2.1622727E-6 45.000004 1 TTCGGTG 30 2.1622727E-6 45.000004 30 ACCGTTG 30 2.1622727E-6 45.000004 43 TCGAGCG 30 2.1622727E-6 45.000004 1 TCGGTGA 30 2.1622727E-6 45.000004 31 TCGAACG 30 2.1622727E-6 45.000004 1 TACCGTG 30 2.1622727E-6 45.000004 27 >>END_MODULE