SRR3553382_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553382_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	580249
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23997	4.135638320789868	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5615	0.9676880098026882	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGT	4629	0.797760961242501	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4481	0.7722546699778888	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	4099	0.7064208641462544	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC	3040	0.5239130097596032	No Hit
AATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	2879	0.49616630101904524	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2337	0.40275812625269497	No Hit
CTACAGGGATTTACACACTTTTTTTTTTAATTATTTTTTTTAAAGATTTAT	864	0.14890159224746619	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT	855	0.1473505339948884	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	734	0.12649741748800947	No Hit
TCTACAGGGGGATTTTGGAACATATTTCCTGACATGAAAGCAACTTCCCAA	697	0.1201208446718564	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	623	0.10736769903955026	No Hit
AACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTG	609	0.10495494175776263	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTAT	604	0.10409324272855273	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	603	0.10392090292271076	No Hit
AAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	601	0.10357622331102682	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	595	0.10254218447597496	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGCTCG	20	7.0303946E-4	45.000004	34
CGGGTTA	60	0.0	45.000004	6
CTGCTAC	20	7.0303946E-4	45.000004	21
TTTAGCG	30	2.1636351E-6	45.000004	1
AGGTATC	20	7.0303946E-4	45.000004	33
AACGTAG	35	1.2105374E-7	45.000004	1
CGGGTCC	35	1.2105374E-7	45.000004	6
TTAGGCG	20	7.0303946E-4	45.000004	1
CGTGGAC	20	7.0303946E-4	45.000004	17
TCGTTGA	70	0.0	45.000004	24
TTGGCCG	60	0.0	45.000004	1
GGTACCC	20	7.0303946E-4	45.000004	14
CGAACAG	30	2.1636351E-6	45.000004	1
ACGCCTA	30	2.1636351E-6	45.000004	21
GCGACTC	20	7.0303946E-4	45.000004	36
GTCGATG	30	2.1636351E-6	45.000004	1
CGAGTTG	20	7.0303946E-4	45.000004	1
AGTCACG	35	1.2105374E-7	45.000004	1
GTACAAT	30	2.1636351E-6	45.000004	35
TACCACG	40	6.8048394E-9	45.000004	1