##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 580249 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.427683632371618 31.0 31.0 34.0 30.0 34.0 2 31.631103198799135 31.0 31.0 34.0 30.0 34.0 3 31.810712297651527 31.0 31.0 34.0 30.0 34.0 4 35.56343914422946 37.0 35.0 37.0 33.0 37.0 5 35.27090438759912 37.0 35.0 37.0 33.0 37.0 6 33.915407006302466 37.0 35.0 37.0 31.0 37.0 7 34.74747909949004 37.0 35.0 37.0 32.0 37.0 8 35.4489555346067 37.0 35.0 37.0 32.0 37.0 9 37.05991738029708 39.0 37.0 39.0 33.0 39.0 10 36.462663442763365 38.0 35.0 39.0 32.0 39.0 11 36.53856189325617 38.0 35.0 39.0 32.0 39.0 12 36.5501327878204 38.0 35.0 39.0 32.0 39.0 13 36.5630272520935 39.0 35.0 39.0 32.0 39.0 14 37.645160956761664 39.0 37.0 41.0 32.0 41.0 15 37.68876120424163 39.0 37.0 41.0 32.0 41.0 16 37.54825083714061 39.0 36.0 41.0 32.0 41.0 17 37.46258933664685 39.0 36.0 40.0 32.0 41.0 18 37.26297847992844 39.0 36.0 40.0 32.0 41.0 19 37.12283002641969 39.0 35.0 40.0 32.0 41.0 20 37.0617648630157 39.0 35.0 40.0 31.0 41.0 21 37.00409307038875 39.0 35.0 40.0 31.0 41.0 22 36.95426618572372 39.0 35.0 40.0 31.0 41.0 23 36.76450627230724 39.0 35.0 40.0 31.0 41.0 24 36.63569605462482 38.0 35.0 40.0 31.0 41.0 25 36.66804940637554 38.0 35.0 40.0 31.0 41.0 26 36.61831903200178 38.0 35.0 40.0 31.0 41.0 27 36.570301715298086 38.0 35.0 40.0 31.0 41.0 28 36.407294109942455 38.0 35.0 40.0 30.0 41.0 29 36.25341879089839 38.0 35.0 40.0 30.0 41.0 30 36.22666475943948 38.0 35.0 40.0 30.0 41.0 31 36.05182257961668 38.0 35.0 40.0 30.0 41.0 32 36.0159035172831 38.0 35.0 40.0 30.0 41.0 33 35.8651423785306 38.0 35.0 40.0 29.0 41.0 34 35.83184977483804 38.0 35.0 40.0 29.0 41.0 35 35.7062157797773 38.0 35.0 40.0 29.0 41.0 36 35.59130993763022 38.0 34.0 40.0 28.0 41.0 37 35.52763382616773 38.0 34.0 40.0 28.0 41.0 38 35.426389360429745 38.0 34.0 40.0 27.0 41.0 39 35.29495613090242 38.0 34.0 40.0 26.0 41.0 40 35.14597353894621 38.0 34.0 40.0 26.0 41.0 41 35.12878264331347 38.0 34.0 40.0 26.0 41.0 42 35.115703775448125 38.0 34.0 40.0 26.0 41.0 43 35.072529207288596 38.0 34.0 40.0 25.0 41.0 44 34.920073968244665 38.0 34.0 40.0 25.0 41.0 45 34.70165739191278 37.0 33.0 40.0 24.0 41.0 46 34.508254215000804 37.0 33.0 40.0 24.0 41.0 47 34.41188696576815 37.0 33.0 40.0 23.0 41.0 48 34.321475780225384 37.0 33.0 40.0 23.0 41.0 49 34.14301963467408 37.0 33.0 40.0 23.0 41.0 50 34.04864463359696 37.0 33.0 40.0 23.0 41.0 51 32.87369215629842 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 3.0 13 6.0 14 10.0 15 36.0 16 83.0 17 177.0 18 337.0 19 730.0 20 1271.0 21 2146.0 22 2933.0 23 3635.0 24 4561.0 25 5156.0 26 6093.0 27 7274.0 28 9196.0 29 11208.0 30 14423.0 31 18493.0 32 23784.0 33 30748.0 34 41997.0 35 62789.0 36 61514.0 37 76187.0 38 101675.0 39 93768.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.81829697250663 37.30208927546622 20.710419147641787 25.16919460438536 2 18.394861516349014 39.158533663995975 21.247602322451222 21.199002497203786 3 17.1733169725411 37.62574343083745 22.106543914767627 23.094395681853825 4 20.46966043888055 36.08967874136793 18.701109351330206 24.73955146842132 5 15.3704702636282 42.22308009147797 16.77486734143445 25.63158230345938 6 17.593653758989674 42.99533476145586 19.18331612807605 20.227695351478417 7 75.85036768697576 14.992184389805066 5.175709049046185 3.9817388741729847 8 77.97221537650215 12.287655816726957 3.9250390780509745 5.8150897287199115 9 71.18978231759124 17.409594846350444 7.34219274828565 4.058430087772663 10 25.226928439342423 51.540804034130176 12.085673564280162 11.146593962247241 11 17.2817187104157 34.52535032374032 32.56412333325866 15.628807632585321 12 20.953418273878974 30.510005187428156 33.150768032344736 15.385808506348136 13 22.04501860408204 33.060806653695224 26.891730963775895 18.00244377844684 14 15.341861855858433 35.60126773161178 29.16523768244323 19.891632730086567 15 13.90851169067073 38.561548576559375 27.434084332760587 20.095855400009306 16 16.464655690918896 37.61712644054535 27.13834922593576 18.779868642599986 17 15.586239700542354 36.54741326568421 28.000909954174848 19.865437079598586 18 16.782794972503183 36.97826278028915 26.334901051100474 19.90404119610719 19 17.029585574468893 38.99929168339799 27.873723177463468 16.09739956466965 20 17.580900613357368 37.97852301339597 26.760063352112628 17.680513021134033 21 17.625019603652913 38.09985023670872 25.73222875007109 18.54290140956727 22 17.322907924011933 36.26356960546248 27.33464426478977 19.078878205735812 23 16.93790079776096 36.25029944041265 25.819949711244654 20.991850050581736 24 14.03500910815874 38.14396922700427 26.67268707055075 21.148334594286247 25 15.653279885014882 38.69545660569859 25.003231371359536 20.648032137926993 26 16.43484090450824 38.17274997457988 24.46915031305526 20.923258807856627 27 14.931520778148691 37.65090504249038 25.848902798626106 21.568671380734823 28 16.277322321968672 35.93922609086789 26.77695265308514 21.0064989340783 29 18.02622667165303 36.2180718967202 24.34885712857756 21.40684430304921 30 18.26681304060843 35.989721653979586 24.712494118904125 21.03097118650786 31 17.991414030872953 38.18774353768813 22.893964487659606 20.92687794377931 32 19.945747429120946 35.309151760709625 22.524640283740258 22.22046052642917 33 17.092144923989526 35.54853175102413 26.01848516757461 21.34083815741173 34 16.815194856001476 35.22539461507043 24.710598381039866 23.248812147888234 35 18.948072293101756 33.78480617803736 26.201682381184625 21.06543914767626 36 18.36470205032667 35.500104265582536 27.359978216248543 18.775215467842255 37 19.131958865935143 36.42591370256562 26.261656633617637 18.180470797881597 38 19.339973011586405 33.123883022633386 30.883465546687717 16.652678419092492 39 18.31765328333181 34.39868056644647 27.610560293942772 19.67310585627894 40 18.908089458146414 35.821173323866134 26.056744604471525 19.21399261351592 41 16.101535720009856 32.91311144008865 30.455718148587934 20.529634691313557 42 18.829502506682477 33.463564779947916 25.590393089863145 22.11653962350646 43 17.817006147360875 33.68347037220228 26.980485963784513 21.519037516652332 44 19.712399332010914 31.795143119591764 25.316717478186092 23.175740070211237 45 21.008567011748404 33.5337070809256 25.740156381139823 19.71756952618617 46 17.735661759003463 34.03711165379001 28.282168517308946 19.945058069897577 47 17.786502001726845 34.37834446935712 26.44950702198539 21.385646506930645 48 17.14126176865449 32.35714322644244 29.692252808707988 20.809342196195082 49 18.28094490468747 31.70707747880651 28.263555818278014 21.748421798228 50 18.134111390110107 30.52861788645909 27.34429529391692 23.99297542951388 51 17.190378613319453 29.751537701917623 29.957828449510473 23.10025523525245 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 27108.0 1 20445.5 2 13783.0 3 8513.5 4 3244.0 5 2597.5 6 1951.0 7 2034.5 8 2118.0 9 2405.5 10 2693.0 11 3011.0 12 3329.0 13 3862.5 14 4396.0 15 4600.0 16 4804.0 17 5022.0 18 5240.0 19 4615.0 20 3990.0 21 4039.5 22 4089.0 23 4610.5 24 5132.0 25 5684.5 26 6521.0 27 6805.0 28 8724.0 29 10643.0 30 11585.5 31 12528.0 32 15470.0 33 18412.0 34 21200.0 35 23988.0 36 24041.0 37 24094.0 38 24980.5 39 25867.0 40 26134.5 41 26402.0 42 29573.0 43 32744.0 44 41028.5 45 49313.0 46 48773.5 47 48234.0 48 50951.5 49 53669.0 50 48926.0 51 44183.0 52 38883.0 53 33583.0 54 27923.5 55 22264.0 56 19930.5 57 17597.0 58 15050.0 59 12503.0 60 11331.5 61 10160.0 62 8626.5 63 7093.0 64 5945.0 65 4797.0 66 3856.0 67 2915.0 68 2251.0 69 1587.0 70 1277.0 71 967.0 72 719.5 73 472.0 74 562.0 75 537.0 76 422.0 77 256.0 78 90.0 79 81.5 80 73.0 81 59.0 82 45.0 83 30.0 84 15.0 85 10.0 86 5.0 87 5.5 88 6.0 89 3.5 90 1.0 91 1.0 92 1.0 93 2.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 580249.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.30701738813024 #Duplication Level Percentage of deduplicated Percentage of total 1 75.98306288100267 20.74870819294933 2 10.14055208228315 5.5381646407229255 3 3.9244264924597227 3.214931474041098 4 2.080634055514567 2.2726364132908885 5 1.2570135475479634 1.7162645400003758 6 0.8592337481160055 1.4077866540163246 7 0.6530911650625627 1.2483780260278343 8 0.5027203064034551 1.0982233718660246 9 0.4265265568167178 1.0482451293144088 >10 3.084904266778536 17.883019046067275 >50 0.6119866502281414 11.778849255388277 >100 0.46185271108693415 21.613115684070316 >500 0.00890625062702077 1.558758415582907 >1k 0.0038169645544374724 3.7288252970564026 >5k 6.36160759072912E-4 0.9754183108768553 >10k+ 6.36160759072912E-4 4.168675548728744 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 23997 4.135638320789868 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5615 0.9676880098026882 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGT 4629 0.797760961242501 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4481 0.7722546699778888 No Hit CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT 4099 0.7064208641462544 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC 3040 0.5239130097596032 No Hit AATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 2879 0.49616630101904524 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2337 0.40275812625269497 No Hit CTACAGGGATTTACACACTTTTTTTTTTAATTATTTTTTTTAAAGATTTAT 864 0.14890159224746619 No Hit AATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT 855 0.1473505339948884 No Hit AATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT 734 0.12649741748800947 No Hit TCTACAGGGGGATTTTGGAACATATTTCCTGACATGAAAGCAACTTCCCAA 697 0.1201208446718564 No Hit ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 623 0.10736769903955026 No Hit AACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTG 609 0.10495494175776263 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTAT 604 0.10409324272855273 No Hit CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 603 0.10392090292271076 No Hit AAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 601 0.10357622331102682 No Hit AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 595 0.10254218447597496 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.7233980584197475E-4 0.0 0.0 0.87359047581297 0.0 2 1.7233980584197475E-4 0.0 0.0 1.1515745826360753 0.0 3 1.7233980584197475E-4 0.0 0.0 1.5379604273337826 0.0 4 1.7233980584197475E-4 0.0 0.0 3.3146114857587 0.0 5 1.7233980584197475E-4 0.0 0.0 3.5464085246161563 0.0 6 3.446796116839495E-4 0.0 0.0 4.753821204345031 0.0 7 3.446796116839495E-4 0.0 0.0 5.714960301525724 0.0 8 3.446796116839495E-4 0.0 0.0 6.370196243336912 0.0 9 3.446796116839495E-4 0.0 0.0 8.307985020224077 0.0 10 3.446796116839495E-4 0.0 0.0 10.013976758253785 0.0 11 3.446796116839495E-4 0.0 0.0 11.993299428348864 0.0 12 3.446796116839495E-4 0.0 0.0 12.817256040079345 0.0 13 3.446796116839495E-4 0.0 0.0 13.157454816811404 0.0 14 3.446796116839495E-4 0.0 0.0 13.580376700347609 0.0 15 3.446796116839495E-4 0.0 0.0 13.893518127562478 0.0 16 3.446796116839495E-4 0.0 0.0 14.487056418882238 0.0 17 3.446796116839495E-4 0.0 0.0 15.31980236071066 0.0 18 3.446796116839495E-4 0.0 0.0 16.605457312291794 0.0 19 3.446796116839495E-4 0.0 0.0 17.053540807480925 0.0 20 3.446796116839495E-4 0.0 0.0 17.565045351219908 0.0 21 3.446796116839495E-4 0.0 0.0 18.061211652238953 0.0 22 3.446796116839495E-4 0.0 0.0 18.633207467828466 0.0 23 3.446796116839495E-4 0.0 0.0 19.180731030988422 0.0 24 3.446796116839495E-4 0.0 0.0 19.53488933199368 0.0 25 3.446796116839495E-4 0.0 0.0 19.86061156503501 0.0 26 3.446796116839495E-4 0.0 0.0 20.15807006991826 0.0 27 3.446796116839495E-4 0.0 0.0 20.54324953597507 0.0 28 3.446796116839495E-4 0.0 0.0 20.91222906028274 0.0 29 3.446796116839495E-4 0.0 0.0 21.289825574882506 0.0 30 3.446796116839495E-4 0.0 0.0 21.762726002112885 0.0 31 3.446796116839495E-4 0.0 0.0 22.103958817679995 0.0 32 3.446796116839495E-4 0.0 0.0 22.44295121577116 0.0 33 3.446796116839495E-4 0.0 0.0 22.788837206096005 0.0 34 3.446796116839495E-4 0.0 0.0 23.128174283798852 0.0 35 3.446796116839495E-4 0.0 0.0 23.48336662363916 0.0 36 3.446796116839495E-4 0.0 0.0 23.820290944060222 0.0 37 3.446796116839495E-4 0.0 0.0 24.17100244894864 0.0 38 3.446796116839495E-4 0.0 0.0 24.532916041216787 0.0 39 5.170194175259242E-4 0.0 0.0 24.916544449021025 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGCTCG 20 7.0303946E-4 45.000004 34 CGGGTTA 60 0.0 45.000004 6 CTGCTAC 20 7.0303946E-4 45.000004 21 TTTAGCG 30 2.1636351E-6 45.000004 1 AGGTATC 20 7.0303946E-4 45.000004 33 AACGTAG 35 1.2105374E-7 45.000004 1 CGGGTCC 35 1.2105374E-7 45.000004 6 TTAGGCG 20 7.0303946E-4 45.000004 1 CGTGGAC 20 7.0303946E-4 45.000004 17 TCGTTGA 70 0.0 45.000004 24 TTGGCCG 60 0.0 45.000004 1 GGTACCC 20 7.0303946E-4 45.000004 14 CGAACAG 30 2.1636351E-6 45.000004 1 ACGCCTA 30 2.1636351E-6 45.000004 21 GCGACTC 20 7.0303946E-4 45.000004 36 GTCGATG 30 2.1636351E-6 45.000004 1 CGAGTTG 20 7.0303946E-4 45.000004 1 AGTCACG 35 1.2105374E-7 45.000004 1 GTACAAT 30 2.1636351E-6 45.000004 35 TACCACG 40 6.8048394E-9 45.000004 1 >>END_MODULE