SRR3553378_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553378_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	863771
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19144	2.2163281703136595	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4629	0.5359059287704727	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3414	0.3952436467535955	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2147	0.2485612506092471	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	2004	0.2320059367587011	Illumina Single End Adapter 1 (95% over 22bp)
AATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGT	1044	0.12086536825153889	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	875	0.10129999733725721	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATACG	45	3.8380676E-10	45.000004	1
ATAGTCG	45	3.8380676E-10	45.000004	41
TCAACGG	135	0.0	45.000004	2
ACAACGT	40	6.8121153E-9	45.0	44
TTTAGCG	35	1.2114651E-7	45.0	1
TCGTTTA	35	1.2114651E-7	45.0	27
TCTTGCG	20	7.032312E-4	45.0	1
GGTACCC	75	0.0	45.0	8
CATATCG	20	7.032312E-4	45.0	41
CTCCGCA	40	6.8121153E-9	45.0	14
TTAGCGT	20	7.032312E-4	45.0	41
GCGGTAC	20	7.032312E-4	45.0	35
GCGAAAT	20	7.032312E-4	45.0	1
TTGCTCG	20	7.032312E-4	45.0	16
CGTGAGT	20	7.032312E-4	45.0	27
TAGCGTC	20	7.032312E-4	45.0	42
CCGGATC	35	1.2114651E-7	45.0	19
GGCCGAT	40	6.8121153E-9	45.0	8
TAAGTCG	20	7.032312E-4	45.0	24
CGATTCG	25	3.8899983E-5	45.0	15