SRR3553374_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553374_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	448875
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11666	2.598941798941799	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	5194	1.1571150097465888	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	5163	1.1502088554720133	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	3735	0.8320802005012531	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	3396	0.7565580618212198	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2956	0.6585352269562795	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2557	0.5696463380673907	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1198	0.2668894458368143	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTT	1147	0.2555277081592871	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCT	842	0.1875800612642718	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	840	0.18713450292397663	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTAT	767	0.17087162350320245	No Hit
AACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	622	0.13856864383180173	No Hit
GTGCGGGATGGTAATTGTTACTATATTCTTTTTATCTTTAGTAGACACTTT	609	0.13567251461988306	No Hit
AAAGTTGGGGCTTTGAATTCTGGTTTGTCTTTGTTTTTCCTATGTTTCCAT	606	0.13500417710944027	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGTC	598	0.13322194374825955	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	593	0.1321080478975216	No Hit
CGAAATGGGAACTTGGATATTTCAAACTCTATTTCCCCTCTTTTGAGAAAG	583	0.12988025619604565	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTATC	30	2.1625347E-6	45.000004	44
CTATGCG	30	2.1625347E-6	45.000004	1
CGAACCG	30	2.1625347E-6	45.000004	22
ACGCCAT	30	2.1625347E-6	45.000004	22
CTACTAG	60	0.0	45.000004	1
AATCACG	60	0.0	45.000004	1
AGTCACG	35	1.2097189E-7	45.000004	1
GGTCGGA	30	2.1625347E-6	45.000004	8
GCAACTT	35	1.2097189E-7	45.000004	9
TTTGTCG	30	2.1625347E-6	45.000004	21
GAACTTC	35	1.2097189E-7	45.000004	9
CGCATAG	35	1.2097189E-7	45.000004	1
GGCAACG	30	2.1625347E-6	45.000004	1
GGCAACC	95	0.0	45.000004	8
TCGGGCT	30	2.1625347E-6	45.000004	5
ACTTCGT	30	2.1625347E-6	45.000004	23
GCGCCAT	30	2.1625347E-6	45.000004	37
CCAGATA	35	1.2097189E-7	45.000004	18
GCCATAC	30	2.1625347E-6	45.000004	39
GCCGCGA	35	1.2097189E-7	45.000004	27