SRR3553373_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553373_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443684
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11540	2.600950225836406	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	4768	1.0746387068273817	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	4635	1.044662417396165	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	3348	0.7545911053813075	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	3112	0.7014000955635091	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2932	0.660830681295697	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2676	0.6031319587814751	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1168	0.2632504214711371	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTT	1062	0.23935954418009214	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCT	804	0.18121005039622795	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	773	0.17422309571677141	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTAT	692	0.1559668592962559	No Hit
AACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	636	0.14334526374626988	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGTC	613	0.13816139414538275	No Hit
CGAAATGGGAACTTGGATATTTCAAACTCTATTTCCCCTCTTTTGAGAAAG	602	0.1356821521623498	No Hit
AAAGTTGGGGCTTTGAATTCTGGTTTGTCTTTGTTTTTCCTATGTTTCCAT	583	0.13139982510074738	No Hit
GTGCGGGATGGTAATTGTTACTATATTCTTTTTATCTTTAGTAGACACTTT	547	0.12328594224718493	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	494	0.11134050360166244	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATC	20	7.028598E-4	45.000004	44
TTCTACG	40	6.7993824E-9	45.000004	1
GTCGCTT	20	7.028598E-4	45.000004	40
TTGGCAT	20	7.028598E-4	45.000004	16
ACCGGCA	20	7.028598E-4	45.000004	29
ATTAGTT	20	7.028598E-4	45.000004	12
ACGCCCT	20	7.028598E-4	45.000004	25
CGTATAG	20	7.028598E-4	45.000004	1
AGTCACG	20	7.028598E-4	45.000004	1
CGAGTCG	20	7.028598E-4	45.000004	28
CGAGTCC	20	7.028598E-4	45.000004	19
GCGGTTG	20	7.028598E-4	45.000004	36
CGCGGAG	20	7.028598E-4	45.000004	4
CGGTTGG	20	7.028598E-4	45.000004	15
GGCCGTA	20	7.028598E-4	45.000004	42
CGGCAAT	20	7.028598E-4	45.000004	31
CAACCGT	40	6.7993824E-9	45.000004	32
CGCGCGA	20	7.028598E-4	45.000004	35
GTTAGTC	20	7.028598E-4	45.000004	41
GTCTATC	20	7.028598E-4	45.000004	45