##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553373_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 443684 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45873414412059 31.0 31.0 34.0 30.0 34.0 2 31.669151918933295 31.0 31.0 34.0 30.0 34.0 3 31.840548678789407 31.0 31.0 34.0 30.0 34.0 4 35.57882637192236 37.0 35.0 37.0 33.0 37.0 5 35.33969672108979 37.0 35.0 37.0 33.0 37.0 6 32.4418910756304 37.0 35.0 37.0 25.0 37.0 7 34.01123547389584 37.0 35.0 37.0 26.0 37.0 8 35.1465164396282 37.0 35.0 37.0 32.0 37.0 9 37.02802895754636 39.0 37.0 39.0 34.0 39.0 10 36.51958150395326 38.0 35.0 39.0 32.0 39.0 11 36.625783215081 39.0 35.0 39.0 32.0 39.0 12 36.55057428259752 38.0 35.0 39.0 32.0 39.0 13 36.60604844889606 39.0 35.0 39.0 32.0 39.0 14 37.67761514952083 39.0 37.0 41.0 32.0 41.0 15 37.80001983393586 39.0 37.0 41.0 33.0 41.0 16 37.633065424942075 39.0 36.0 41.0 32.0 41.0 17 37.63918689878382 39.0 36.0 41.0 32.0 41.0 18 37.44945276367866 39.0 36.0 40.0 32.0 41.0 19 37.34365900054994 39.0 36.0 40.0 32.0 41.0 20 37.33756682684072 39.0 36.0 40.0 32.0 41.0 21 37.32604511318866 39.0 36.0 40.0 32.0 41.0 22 37.243644125098044 39.0 35.0 40.0 32.0 41.0 23 37.06057915092724 39.0 35.0 40.0 31.0 41.0 24 36.97414826768601 39.0 35.0 40.0 31.0 41.0 25 37.01446074233013 39.0 35.0 40.0 31.0 41.0 26 36.94718313033601 39.0 35.0 40.0 31.0 41.0 27 36.89178784900965 39.0 35.0 40.0 31.0 41.0 28 36.807367405631034 39.0 35.0 40.0 31.0 41.0 29 36.6187331524238 39.0 35.0 40.0 31.0 41.0 30 36.66521217803662 39.0 35.0 40.0 31.0 41.0 31 36.20720828337285 38.0 35.0 40.0 30.0 41.0 32 36.372199583487344 38.0 35.0 40.0 30.0 41.0 33 36.27343109059601 38.0 35.0 40.0 30.0 41.0 34 36.256606052956606 38.0 35.0 40.0 30.0 41.0 35 36.24465385274204 38.0 35.0 40.0 30.0 41.0 36 36.09707133906113 38.0 35.0 40.0 30.0 41.0 37 36.10687110646316 38.0 35.0 40.0 30.0 41.0 38 35.93406568638941 38.0 35.0 40.0 29.0 41.0 39 35.86005129777048 38.0 35.0 40.0 29.0 41.0 40 35.67678122267199 38.0 35.0 40.0 28.0 41.0 41 35.6690166875524 38.0 35.0 40.0 28.0 41.0 42 35.61407668520839 38.0 35.0 40.0 28.0 41.0 43 35.586237051595276 38.0 35.0 40.0 28.0 41.0 44 35.46408705294759 38.0 34.0 40.0 27.0 41.0 45 35.254742113756635 38.0 34.0 40.0 26.0 41.0 46 34.93593413330208 38.0 33.0 40.0 25.0 41.0 47 34.99416927362718 38.0 34.0 40.0 26.0 41.0 48 35.03510832033609 38.0 34.0 40.0 26.0 41.0 49 34.92209545532406 37.0 34.0 40.0 26.0 41.0 50 34.788577005255995 37.0 33.0 40.0 26.0 41.0 51 33.66724064875001 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 0.0 12 3.0 13 5.0 14 7.0 15 16.0 16 42.0 17 102.0 18 214.0 19 444.0 20 912.0 21 1380.0 22 1977.0 23 2507.0 24 2941.0 25 3232.0 26 3731.0 27 4504.0 28 5728.0 29 7288.0 30 9644.0 31 13045.0 32 17464.0 33 23120.0 34 32277.0 35 45097.0 36 47558.0 37 61115.0 38 80566.0 39 78743.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.96075585326494 38.1981320038586 20.797234067489477 23.043878075386985 2 19.872251422183357 38.04689824289359 20.76951163440647 21.311338700516583 3 18.006283751498813 33.660668403638624 24.75725967129759 23.57578817356497 4 21.66970185988226 34.21669476474247 19.31306966219201 24.800533713183256 5 16.154289990173186 40.95662678843502 17.27873892229605 25.610344299095754 6 16.0810396588563 43.98490817789237 20.736605331722576 19.197446831528744 7 77.87051144508254 13.242307588283552 4.729492161087621 4.1576888055462895 8 79.34273041173448 9.768889570054364 3.1874036476411143 7.700976370570045 9 75.72709405793312 13.706601996015182 6.519054101567782 4.047249844483912 10 29.097285455414212 46.88269128478827 11.962342568134078 12.057680691663435 11 19.527411400906953 30.143750957888948 32.57566195760947 17.75317568359463 12 22.77882456883728 28.845304315684135 33.023277828364336 15.352593287114253 13 22.3778635244904 31.61754762398464 26.145409796161236 19.859179055363725 14 16.586579637760206 32.97684838759117 29.552789823387815 20.883782151260807 15 16.28884521416143 35.191713020978895 26.42376105516539 22.09568070969429 16 17.820565988406162 35.16894907186195 28.088684739589436 18.921800200142442 17 17.347932312186153 34.016326935386445 27.987035818285083 20.648704934142316 18 18.214765463708403 33.54189017408786 25.67638229009836 22.566962072105373 19 17.706520857186646 35.98709892626283 27.48081968247672 18.8255605340738 20 19.84633207417892 36.29407416088928 25.98989370813462 17.869700056797182 21 18.69325916643377 34.08980265233815 27.23672703996538 19.9802111412627 22 20.264647812407027 34.16823685325593 25.69193389890102 19.875181435436033 23 18.776877236952423 35.61859341333021 23.39007041047232 22.21445893924505 24 14.768619107292578 38.65791869889381 26.295516628952136 20.277945564861476 25 15.59307975946845 36.22690924171257 26.653203631413348 21.52680736740563 26 20.659298058978912 36.16988667610281 22.649002443180283 20.521812821737996 27 15.757836658522734 35.4376087485688 27.015849117840624 21.78870547506784 28 18.1487274727058 34.62374122122952 28.20791374040984 19.019617565654837 29 19.141325808458273 35.22281623858422 24.692348608469093 20.94350934448842 30 19.12374572894222 34.35034844619143 24.55103181543621 21.974874009430135 31 21.362501239620993 37.45435940894871 22.197329630998638 18.98580972043166 32 19.06446930698425 31.654510868095308 24.66913388808251 24.61188593683793 33 18.937126423310282 35.13784585425663 24.892040280920654 21.032987441512425 34 18.577636335770503 33.580431117642284 26.24998873071826 21.59194381586895 35 19.76429170310401 31.76923215621929 25.684946944221565 22.781529196455136 36 18.916165559271914 35.68395524742835 25.704330108816187 19.695549084483552 37 18.384706232363573 34.72110781547227 24.220841860423185 22.67334409174097 38 18.203496181967346 36.21406226052776 26.23646559262899 19.3459759648759 39 19.042156129136952 33.85224619323663 24.28710523706061 22.81849244056581 40 21.75624994365359 35.58410941120257 22.881375032680918 19.778265612462924 41 19.055904652861045 32.022790995393116 28.63028642006473 20.291017931681107 42 22.818041669296164 30.691212664869592 24.91390268749831 21.576842978335932 43 20.73480224664401 32.21076261483398 26.15983447678979 20.894600661732223 44 20.421290828607745 31.561877372183805 23.372715716591088 24.64411608261736 45 21.898693664860577 35.11891346093166 23.706962613030896 19.275430261176872 46 17.493531432280633 32.810063017823495 28.20723758350538 21.489167966390493 47 19.37099377034105 34.28340891264954 25.667141479070686 20.678455837938714 48 18.551491602131247 31.863668737209366 28.942220138657245 20.642619522002146 49 20.457577915813957 31.46856771936784 25.987414466151588 22.08643989866662 50 18.95042417576473 30.478448625598396 25.720332488888488 24.85079470974838 51 17.54694782773325 29.4993734279352 29.173465799983774 23.780212944347777 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 13102.0 1 10358.0 2 7614.0 3 4647.5 4 1681.0 5 1360.5 6 1040.0 7 1121.5 8 1203.0 9 1332.0 10 1461.0 11 1691.0 12 1921.0 13 2251.5 14 2582.0 15 2606.5 16 2631.0 17 2539.5 18 2448.0 19 2676.5 20 2905.0 21 2821.5 22 2738.0 23 3113.0 24 3488.0 25 4151.5 26 5264.0 27 5713.0 28 5841.0 29 5969.0 30 7619.5 31 9270.0 32 12752.5 33 16235.0 34 16287.0 35 16339.0 36 17934.5 37 19530.0 38 19457.0 39 19384.0 40 19894.0 41 20404.0 42 21876.0 43 23348.0 44 31588.0 45 39828.0 46 40127.0 47 40426.0 48 40959.5 49 41493.0 50 38914.5 51 36336.0 52 32108.5 53 27881.0 54 24528.0 55 21175.0 56 17449.0 57 13723.0 58 12304.0 59 10885.0 60 10069.0 61 9253.0 62 7510.5 63 5768.0 64 4905.5 65 4043.0 66 3197.0 67 2351.0 68 2016.5 69 1682.0 70 1305.0 71 928.0 72 810.0 73 692.0 74 649.5 75 448.0 76 289.0 77 259.0 78 229.0 79 169.0 80 109.0 81 81.0 82 53.0 83 49.0 84 45.0 85 38.0 86 31.0 87 27.5 88 24.0 89 15.5 90 7.0 91 5.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 443684.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.771332177361828 #Duplication Level Percentage of deduplicated Percentage of total 1 76.40003543316655 21.21730762376682 2 9.462612468777763 5.255787082721463 3 3.7117613752120735 3.0924167434234753 4 2.0837942782796905 2.31478972365565 5 1.2936756000254388 1.796354740902717 6 0.90699339914391 1.511304898218003 7 0.6623789490392487 1.287660207474256 8 0.5347951254494913 1.188157846055337 9 0.4129508254591684 1.0321375092068101 >10 3.4409779732891588 20.77374403040419 >50 0.6541782878664832 12.708325166154472 >100 0.42194499567388166 18.626810727175858 >500 0.006541782878664832 1.1922357913959896 >1k 0.006541782878664832 5.382320093690733 >5k 0.0 0.0 >10k+ 8.17722859833104E-4 2.620647815754232 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11540 2.600950225836406 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC 4768 1.0746387068273817 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT 4635 1.044662417396165 No Hit AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT 3348 0.7545911053813075 No Hit CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT 3112 0.7014000955635091 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2932 0.660830681295697 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2676 0.6031319587814751 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1168 0.2632504214711371 No Hit AATGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTT 1062 0.23935954418009214 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCT 804 0.18121005039622795 No Hit ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 773 0.17422309571677141 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTAT 692 0.1559668592962559 No Hit AACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG 636 0.14334526374626988 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGTC 613 0.13816139414538275 No Hit CGAAATGGGAACTTGGATATTTCAAACTCTATTTCCCCTCTTTTGAGAAAG 602 0.1356821521623498 No Hit AAAGTTGGGGCTTTGAATTCTGGTTTGTCTTTGTTTTTCCTATGTTTCCAT 583 0.13139982510074738 No Hit GTGCGGGATGGTAATTGTTACTATATTCTTTTTATCTTTAGTAGACACTTT 547 0.12328594224718493 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 494 0.11134050360166244 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2538563482117903E-4 0.0 0.0 0.8355045482821107 0.0 2 2.2538563482117903E-4 0.0 0.0 1.0200953832006563 0.0 3 2.2538563482117903E-4 0.0 0.0 1.3719223591565168 0.0 4 2.2538563482117903E-4 0.0 0.0 3.034817572867176 0.0 5 2.2538563482117903E-4 0.0 0.0 3.2205353359598274 0.0 6 2.2538563482117903E-4 0.0 0.0 4.238827634081914 0.0 7 2.2538563482117903E-4 0.0 0.0 5.047962063089947 0.0 8 2.2538563482117903E-4 0.0 0.0 5.681971853841923 0.0 9 2.2538563482117903E-4 0.0 0.0 7.755068922927128 0.0 10 2.2538563482117903E-4 0.0 0.0 9.12203279811758 0.0 11 2.2538563482117903E-4 0.0 0.0 11.577383903859504 0.0 12 2.2538563482117903E-4 0.0 0.0 12.269993959664987 0.0 13 2.2538563482117903E-4 0.0 0.0 12.587336933493207 0.0 14 2.2538563482117903E-4 0.0 0.0 13.015569639653448 0.0 15 2.2538563482117903E-4 0.0 0.0 13.29324474175314 0.0 16 2.2538563482117903E-4 0.0 0.0 13.80396859025793 0.0 17 2.2538563482117903E-4 0.0 0.0 14.448796891481324 0.0 18 2.2538563482117903E-4 0.0 0.0 15.573245823604188 0.0 19 2.2538563482117903E-4 0.0 0.0 15.980743051360879 0.0 20 2.2538563482117903E-4 0.0 0.0 16.39770647578006 0.0 21 2.2538563482117903E-4 0.0 0.0 16.809260644963533 0.0 22 2.2538563482117903E-4 0.0 0.0 17.281443549913902 0.0 23 2.2538563482117903E-4 0.0 0.0 17.721170923450025 0.0 24 2.2538563482117903E-4 0.0 0.0 18.043246995609486 0.0 25 2.2538563482117903E-4 0.0 0.0 18.314385914299365 0.0 26 2.2538563482117903E-4 0.0 0.0 18.585750218624067 0.0 27 2.2538563482117903E-4 0.0 0.0 18.89385238142462 0.0 28 2.2538563482117903E-4 0.0 0.0 19.199024530972494 0.0 29 2.2538563482117903E-4 0.0 0.0 19.50780285067751 0.0 30 2.2538563482117903E-4 0.0 0.0 19.93941634136007 0.0 31 2.2538563482117903E-4 0.0 0.0 20.242334634559732 0.0 32 2.2538563482117903E-4 0.0 0.0 20.549535254821 0.0 33 2.2538563482117903E-4 0.0 0.0 20.836901939218002 0.0 34 2.2538563482117903E-4 0.0 0.0 21.13080480702482 0.0 35 2.2538563482117903E-4 0.0 0.0 21.47654637084051 0.0 36 2.2538563482117903E-4 0.0 0.0 21.789156246337484 0.0 37 2.2538563482117903E-4 0.0 0.0 22.091849153902327 0.0 38 2.2538563482117903E-4 0.0 0.0 22.406262114477872 0.0 39 2.2538563482117903E-4 0.0 0.0 22.7055742375204 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATC 20 7.028598E-4 45.000004 44 TTCTACG 40 6.7993824E-9 45.000004 1 GTCGCTT 20 7.028598E-4 45.000004 40 TTGGCAT 20 7.028598E-4 45.000004 16 ACCGGCA 20 7.028598E-4 45.000004 29 ATTAGTT 20 7.028598E-4 45.000004 12 ACGCCCT 20 7.028598E-4 45.000004 25 CGTATAG 20 7.028598E-4 45.000004 1 AGTCACG 20 7.028598E-4 45.000004 1 CGAGTCG 20 7.028598E-4 45.000004 28 CGAGTCC 20 7.028598E-4 45.000004 19 GCGGTTG 20 7.028598E-4 45.000004 36 CGCGGAG 20 7.028598E-4 45.000004 4 CGGTTGG 20 7.028598E-4 45.000004 15 GGCCGTA 20 7.028598E-4 45.000004 42 CGGCAAT 20 7.028598E-4 45.000004 31 CAACCGT 40 6.7993824E-9 45.000004 32 CGCGCGA 20 7.028598E-4 45.000004 35 GTTAGTC 20 7.028598E-4 45.000004 41 GTCTATC 20 7.028598E-4 45.000004 45 >>END_MODULE