SRR3553372_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553372_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1220881
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12088	0.9901046866975569	No Hit
CTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGCT	2736	0.22410046515589974	Illumina PCR Primer Index 8 (95% over 24bp)
ACGTTAGGGGAAAGGTATTTTTTTCCAGATAAACTATAATGTAAACATGCA	2508	0.20542542639290806	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2465	0.20190337960865964	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2210	0.18101682309741898	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1428	0.11696471646294765	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1241	0.10164790835470452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCAT	30	2.1656124E-6	45.000004	41
GTCGAAC	30	2.1656124E-6	45.000004	36
TAGCGGA	35	1.2120108E-7	45.000004	3
GCGTTAT	35	1.2120108E-7	45.000004	34
TCTAGCG	95	0.0	45.000004	1
CGCGTTA	35	1.2120108E-7	45.000004	33
CGTCCAA	35	1.2120108E-7	45.000004	42
ATCGCGT	30	2.1656124E-6	45.000004	10
AACCGCG	20	7.0334587E-4	45.0	1
ACGCATA	20	7.0334587E-4	45.0	27
CTATACG	20	7.0334587E-4	45.0	1
CATTACG	20	7.0334587E-4	45.0	1
ATATCGT	20	7.0334587E-4	45.0	19
ATATCCG	25	3.8909486E-5	45.0	1
GTTCGTA	20	7.0334587E-4	45.0	30
TGCGATC	20	7.0334587E-4	45.0	22
CGTAGAC	20	7.0334587E-4	45.0	22
CGAATTG	40	6.8157533E-9	45.0	1
CGTACGG	55	1.8189894E-12	45.0	2
TACTCGA	25	3.8909486E-5	45.0	44