SRR3553368_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553368_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1592164
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13559	0.8516082514112868	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2732	0.17159036380674353	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	2536	0.15928007416321435	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2378	0.1493564733281245	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	2256	0.14169394610102978	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1932	0.12134428362907339	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1652	0.10375815556688883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATAC	35	1.21232E-7	45.000004	19
CGGCACG	85	0.0	45.000004	1
GCGCCTA	35	1.21232E-7	45.000004	32
CGTAATG	70	0.0	45.000004	1
GCGCGTA	20	7.0341065E-4	45.0	17
CGGCATA	20	7.0341065E-4	45.0	39
ATAGCGC	25	3.8914863E-5	45.0	36
TACGGTT	25	3.8914863E-5	45.0	28
CGTTCGA	25	3.8914863E-5	45.0	20
CCGTCGA	25	3.8914863E-5	45.0	36
TAGTTCG	25	3.8914863E-5	45.0	1
TTGAGCG	75	0.0	45.0	1
AATGCGA	20	7.0341065E-4	45.0	27
CCGTAGA	20	7.0341065E-4	45.0	10
TACCTCG	20	7.0341065E-4	45.0	1
TATAGCG	40	6.8175723E-9	45.0	1
CGCCGTA	20	7.0341065E-4	45.0	34
CGGTACC	20	7.0341065E-4	45.0	34
ACATATC	55	1.8189894E-12	45.0	32
CGATAGC	25	3.8914863E-5	45.0	45