SRR3553367_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553367_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1578916
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13387	0.8478601774888594	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2860	0.1811369319203808	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2378	0.1506096587785544	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	2374	0.1503563204122322	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	2185	0.1383860826035077	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1871	0.11849902084721416	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1625	0.10291871131839819	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTA	30	2.1660198E-6	45.000004	17
GTCCGAT	30	2.1660198E-6	45.000004	42
CGTAATG	85	0.0	45.000004	1
GTATTCG	20	7.034089E-4	45.0	21
TAGACGC	20	7.034089E-4	45.0	29
TTTGTCG	25	3.8914703E-5	45.0	13
TAGCGAT	25	3.8914703E-5	45.0	45
ATAGCGC	20	7.034089E-4	45.0	36
TAGTTCG	25	3.8914703E-5	45.0	1
CCGTAAC	20	7.034089E-4	45.0	36
CTACGAT	40	6.8175723E-9	45.0	33
CGAATTA	40	6.8175723E-9	45.0	37
TTGCGAC	25	3.8914703E-5	45.0	24
GCGATTA	25	3.8914703E-5	45.0	23
CGTAACA	20	7.034089E-4	45.0	37
ATACGCG	40	6.8175723E-9	45.0	1
GCTCGTA	40	6.8175723E-9	45.0	32
TTCGATA	20	7.034089E-4	45.0	35
TAAGACG	105	0.0	45.0	1
CGATAGC	20	7.034089E-4	45.0	45