SRR3553366_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553366_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	623077
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17287	2.7744564475979696	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4202	0.6743949784697558	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3397	0.5451974635558687	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	3143	0.504432036489872	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1710	0.2744444105624184	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCC	1515	0.24314811812986195	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGT	1473	0.23640737822131133	No Hit
CTTTTTGGGAGAGCATAATCACATACATAACTACACACTCATTTGTGTAGC	1455	0.23351848968907538	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT	1361	0.21843207179850968	No Hit
CAATATGGGAAAAACAAACAAACAAACAAACAAACAAACAAACCCATAAAC	766	0.12293825642737576	No Hit
TTGCTGGGGCCGATGGCGTGCGGGATGCCAGTATTACAAAATTTTAAAAAA	694	0.11138270229843182	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	662	0.10624690046334563	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCG	20	7.0307957E-4	45.000004	1
TCGCCCG	20	7.0307957E-4	45.000004	16
CGGCGTG	20	7.0307957E-4	45.000004	1
CCTTACG	20	7.0307957E-4	45.000004	1
CAAACGC	20	7.0307957E-4	45.000004	35
TCCGCTC	20	7.0307957E-4	45.000004	11
TCCGCAC	20	7.0307957E-4	45.000004	27
CGAAACG	20	7.0307957E-4	45.000004	1
CGGCCTA	40	6.8066583E-9	45.000004	42
CGTTGTC	35	1.2107375E-7	45.000004	45
TAGCGTT	20	7.0307957E-4	45.000004	31
CGGCATG	40	6.8066583E-9	45.000004	1
CGGCACT	20	7.0307957E-4	45.000004	1
TTGTCGA	20	7.0307957E-4	45.000004	36
CCGTGCG	30	2.1638953E-6	45.000004	1
CGATTAG	35	1.2107375E-7	45.000004	1
CGACAGA	20	7.0307957E-4	45.000004	38
CCGCTGA	35	1.2107375E-7	45.000004	36
TCTAGCG	20	7.0307957E-4	45.000004	1
GCGCAGC	40	6.8066583E-9	45.000004	35