SRR3553365_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553365_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	616150
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17103	2.7757851172604076	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3994	0.648218777894993	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3262	0.5294165381806378	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	2954	0.47942871054126435	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1689	0.27412156130812304	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCC	1381	0.2241337336687495	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGT	1369	0.22218615596851415	No Hit
CTTTTTGGGAGAGCATAATCACATACATAACTACACACTCATTTGTGTAGC	1351	0.2192647894181612	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT	1219	0.1978414347155725	No Hit
CAATATGGGAAAAACAAACAAACAAACAAACAAACAAACAAACCCATAAAC	733	0.11896453785604155	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	680	0.11036273634666882	No Hit
TTGCTGGGGCCGATGGCGTGCGGGATGCCAGTATTACAAAATTTTAAAAAA	664	0.10776596607968839	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	25	3.888691E-5	45.000004	36
TGATCGG	25	3.888691E-5	45.000004	2
CGGCGTG	25	3.888691E-5	45.000004	1
AGCCGTC	50	2.1827873E-11	45.000004	38
CGTATAT	50	2.1827873E-11	45.000004	12
GTCGAGA	25	3.888691E-5	45.000004	38
CACGGTT	25	3.888691E-5	45.000004	14
CAACGCT	25	3.888691E-5	45.000004	22
TCCGATA	25	3.888691E-5	45.000004	24
TTGTCGA	25	3.888691E-5	45.000004	36
CCGTGCG	25	3.888691E-5	45.000004	1
CATTCGC	25	3.888691E-5	45.000004	17
ATCGTTA	25	3.888691E-5	45.000004	38
AAGCCGT	50	2.1827873E-11	45.000004	37
TCGGAAC	25	3.888691E-5	45.000004	24
CGCTCAG	25	3.888691E-5	45.000004	1
CACTACG	25	3.888691E-5	45.000004	1
AACGCTA	25	3.888691E-5	45.000004	23
GATATCG	25	3.888691E-5	45.000004	20
ACGCTAG	25	3.888691E-5	45.000004	1