SRR3553360_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553360_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	631744
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17325	2.742408317293081	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3939	0.6235120555161584	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	3890	0.6157557491642185	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2612	0.41345861614831325	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGT	2023	0.3202246479586668	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1764	0.27922702866984095	No Hit
AATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	1745	0.27621948130888463	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCC	1559	0.24677717556478573	No Hit
AAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	650	0.10288977813797993	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGT	35	1.2107739E-7	45.000004	13
ATATCCG	55	1.8189894E-12	45.000004	1
GTCCGCA	35	1.2107739E-7	45.000004	36
CTATTCG	35	1.2107739E-7	45.000004	1
CCGGTGT	35	1.2107739E-7	45.000004	41
GTCGGAT	35	1.2107739E-7	45.000004	17
TATCCGG	70	0.0	45.000004	2
ACGCGGA	55	1.8189894E-12	45.000004	3
GCCCCGA	20	7.030872E-4	45.0	35
CGGGTTA	40	6.8066583E-9	45.0	6
AGCGTTG	20	7.030872E-4	45.0	1
AACGTCA	20	7.030872E-4	45.0	40
ACTATCG	25	3.8888043E-5	45.0	2
AATCCGT	20	7.030872E-4	45.0	28
AATCCCG	50	2.1827873E-11	45.0	1
TCGTTCA	20	7.030872E-4	45.0	16
ACCGGTC	20	7.030872E-4	45.0	16
TACCCGA	25	3.8888043E-5	45.0	34
ACGTTGA	20	7.030872E-4	45.0	17
ACTTGCG	20	7.030872E-4	45.0	1