##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553360_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 631744 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.421301983081754 31.0 31.0 34.0 30.0 34.0 2 31.634141361057644 31.0 31.0 34.0 30.0 34.0 3 31.810503938304123 31.0 31.0 34.0 30.0 34.0 4 35.57037660824638 37.0 35.0 37.0 33.0 37.0 5 35.292096165535405 37.0 35.0 37.0 33.0 37.0 6 33.90727098318306 37.0 35.0 37.0 31.0 37.0 7 34.8156753368453 37.0 35.0 37.0 32.0 37.0 8 35.53756743237767 37.0 35.0 37.0 32.0 37.0 9 37.15972925742073 39.0 37.0 39.0 34.0 39.0 10 36.44440944433188 38.0 35.0 39.0 32.0 39.0 11 36.551451220747644 38.0 35.0 39.0 32.0 39.0 12 36.65697656012562 39.0 35.0 39.0 32.0 39.0 13 36.641128368453046 39.0 35.0 39.0 32.0 39.0 14 37.76941134383548 39.0 37.0 41.0 33.0 41.0 15 37.77295233512309 39.0 37.0 41.0 33.0 41.0 16 37.626309074561846 39.0 36.0 41.0 32.0 41.0 17 37.63004951372708 39.0 37.0 40.0 32.0 41.0 18 37.48522344493972 39.0 36.0 40.0 32.0 41.0 19 37.41184562101104 39.0 36.0 40.0 32.0 41.0 20 37.33500595177794 39.0 36.0 40.0 32.0 41.0 21 37.25280493364401 39.0 36.0 40.0 32.0 41.0 22 37.22244928325398 39.0 35.0 40.0 32.0 41.0 23 37.072804807010435 39.0 35.0 40.0 31.0 41.0 24 36.88413502937899 39.0 35.0 40.0 31.0 41.0 25 36.91833559163205 39.0 35.0 40.0 31.0 41.0 26 36.89317191773883 39.0 35.0 40.0 31.0 41.0 27 36.85253836997265 39.0 35.0 40.0 31.0 41.0 28 36.74579101661433 39.0 35.0 40.0 31.0 41.0 29 36.57486418549286 39.0 35.0 40.0 30.0 41.0 30 36.60311296981055 39.0 35.0 40.0 30.0 41.0 31 36.52295075220342 39.0 35.0 40.0 30.0 41.0 32 36.41026586718671 38.0 35.0 40.0 30.0 41.0 33 36.362878001215684 38.0 35.0 40.0 30.0 41.0 34 36.34201037128964 38.0 35.0 40.0 30.0 41.0 35 36.23505407253571 38.0 35.0 40.0 30.0 41.0 36 36.17251133370479 38.0 35.0 40.0 30.0 41.0 37 36.13480460439672 38.0 35.0 40.0 30.0 41.0 38 36.08187177084389 38.0 35.0 40.0 30.0 41.0 39 35.99530031151859 38.0 35.0 40.0 30.0 41.0 40 35.80371004710769 38.0 35.0 40.0 29.0 41.0 41 35.74260459933137 38.0 35.0 40.0 29.0 41.0 42 35.68300292523554 38.0 35.0 40.0 28.0 41.0 43 35.63046898743795 38.0 35.0 40.0 28.0 41.0 44 35.516315152973355 38.0 34.0 40.0 27.0 41.0 45 35.37400117769223 38.0 34.0 40.0 27.0 41.0 46 35.19567103130382 38.0 34.0 40.0 26.0 41.0 47 35.12337750734475 38.0 34.0 40.0 26.0 41.0 48 34.98753767348799 38.0 33.0 40.0 26.0 41.0 49 34.813150579981766 37.0 33.0 40.0 26.0 41.0 50 34.73168878533077 37.0 33.0 40.0 25.0 41.0 51 33.581892348799514 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 0.0 9 0.0 10 1.0 11 5.0 12 4.0 13 8.0 14 9.0 15 33.0 16 59.0 17 116.0 18 282.0 19 578.0 20 1047.0 21 1714.0 22 2431.0 23 3103.0 24 3705.0 25 4284.0 26 5252.0 27 6763.0 28 8465.0 29 11034.0 30 14245.0 31 18616.0 32 24103.0 33 31391.0 34 43447.0 35 62341.0 36 68422.0 37 88040.0 38 117867.0 39 114350.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.51240375848445 35.726021932934856 20.422987792523553 25.338586516057138 2 19.74122429338466 34.41932175058252 21.834793840543004 24.004660115489816 3 19.264290598723534 35.209673538648566 21.400124100901632 24.125911761726268 4 18.539155100800325 34.859690001013064 19.616331931921792 26.984822966264815 5 16.712465808935264 37.524376962820384 18.705203373518387 27.057953854725962 6 18.278131648262587 42.35560606828082 18.84228421639145 20.52397806706514 7 81.68957679059872 9.736222267247491 4.507838618174451 4.066362323979334 8 83.39390639246277 8.662369567419715 3.564576790598724 4.379147249518792 9 75.98790016209097 13.298741262283457 7.0338618174450405 3.679496758180529 10 26.49554249822713 50.12647528112654 10.627880913787864 12.750101306858475 11 16.647882686657887 31.877785938608046 34.285406747036774 17.188924627697293 12 21.922645881876203 27.491515550602774 33.222317900921894 17.36352066659913 13 22.47144412926755 29.40368250430554 28.924691014081656 19.200182352345255 14 16.217961706007497 32.62587377165434 29.640803869921996 21.515360652416167 15 15.426660166143247 36.29666447168473 28.97328664775605 19.303388714415966 16 16.774991135649884 35.60524516259751 27.56258864350116 20.057175058251445 17 16.56113868908925 33.82604346064228 29.099445344949853 20.51337250531861 18 18.285571370681794 32.90256812886233 27.27655506027758 21.535305440178302 19 17.619953652112248 36.28985791713099 27.796227585857565 18.2939608448992 20 19.376677894843482 33.63704285280114 28.453772414142435 18.532506838212946 21 19.22535077499747 35.81434885016716 26.42130356600142 18.538996808833957 22 18.201518336541383 33.074631496302295 26.96266209097356 21.76118807618276 23 17.513739742680578 33.905347735791715 26.288813190152972 22.292099331374736 24 14.944186252659305 36.337503799007195 27.215137777327524 21.50317217100598 25 16.0422576233411 36.77533937797589 25.501943825346974 21.680459173336033 26 19.28566001418296 34.87694382534697 24.16295208185594 21.674444078614123 27 15.950448282848747 35.412603839529936 25.957824688481413 22.679123189139904 28 17.25936455273022 33.96106650795259 28.370035963934757 20.409532975382433 29 18.326885573903354 33.70684960996859 25.61892158849154 22.34734322763651 30 17.893323878026543 33.75971912673488 26.7760358626279 21.57092113261068 31 19.32649934150542 34.69934023908419 22.77932200384966 23.194838415560735 32 19.331564684429136 32.91507319420525 24.76446155404721 22.988900567318407 33 16.335256053084795 33.463554857663866 27.337655759294904 22.863533329956436 34 16.827069192584336 32.19278695167663 26.22612957147199 24.754014284267043 35 18.54912749468139 32.35202866984095 26.788066052071724 22.310777783405936 36 17.356714112045385 34.80856169587681 27.716923310708136 20.117800881369668 37 16.967157582818356 34.1315469557289 26.63151529733563 22.269780164117112 38 16.804275149427617 33.448358828892715 28.4941368655658 21.253229156113868 39 16.462681086009525 33.525288724546655 27.241889119643396 22.770141069800427 40 19.633427464289333 34.46665104852599 26.1555313544727 19.744390132711985 41 16.354409381015095 33.28341859993922 28.65242883193192 21.709743187113766 42 18.76836186809847 33.25635067369061 24.34419638334515 23.63109107486577 43 18.219247036774387 33.154568939317194 26.379514486880762 22.246669537027657 44 19.033975787660825 30.840498683010843 25.370403201296725 24.75512232803161 45 19.793777226218214 32.46109183466721 26.354504356194912 21.390626582919666 46 16.37878634383548 33.557421993718975 27.569553490021274 22.49423817242427 47 17.5954183973255 32.60355460439672 27.746682200384964 22.054344797892817 48 17.892057542295614 31.515297335629622 29.793872201398035 20.79877292067673 49 18.57160495390538 32.40094088744808 26.25921259244251 22.768241566204033 50 17.50186784520312 30.403929439773076 27.38894235639753 24.70526035862628 51 17.47448333502178 29.78738223077702 28.92611564177895 23.812018792422247 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 19629.0 1 14245.0 2 8861.0 3 5447.0 4 2033.0 5 1743.5 6 1454.0 7 1531.5 8 1609.0 9 1868.5 10 2128.0 11 2745.5 12 3363.0 13 3659.0 14 3955.0 15 4013.5 16 4072.0 17 3913.0 18 3754.0 19 4240.0 20 4726.0 21 4446.5 22 4167.0 23 4626.0 24 5085.0 25 5463.5 26 6605.0 27 7368.0 28 8873.0 29 10378.0 30 13179.0 31 15980.0 32 18637.5 33 21295.0 34 23636.5 35 25978.0 36 27547.0 37 29116.0 38 29710.0 39 30304.0 40 31808.5 41 33313.0 42 35422.5 43 37532.0 44 41325.5 45 45119.0 46 48208.5 47 51298.0 48 55613.0 49 59928.0 50 56715.0 51 53502.0 52 46618.5 53 39735.0 54 34006.0 55 28277.0 56 24712.0 57 21147.0 58 18457.0 59 15767.0 60 13342.5 61 10918.0 62 9946.0 63 8974.0 64 7383.0 65 5792.0 66 4596.5 67 3401.0 68 2760.5 69 2120.0 70 1769.0 71 1418.0 72 1215.0 73 1012.0 74 814.5 75 510.5 76 404.0 77 266.0 78 128.0 79 90.5 80 53.0 81 74.5 82 96.0 83 78.0 84 60.0 85 38.5 86 17.0 87 10.5 88 4.0 89 5.0 90 6.0 91 6.5 92 7.0 93 4.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 631744.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.971899124321567 #Duplication Level Percentage of deduplicated Percentage of total 1 75.83794448679667 21.971692774673723 2 9.856757673623461 5.711379780262028 3 3.8306656653934885 3.3294497771034695 4 1.998239204249844 2.3157113860716434 5 1.3186349527553158 1.9101679416515773 6 0.9257691175246274 1.609277369120142 7 0.714014267028164 1.448044452236646 8 0.5504513396659176 1.2758096548518907 9 0.44188517406994704 1.1522027418919005 >10 3.5034950356862002 21.617480252950795 >50 0.6230948566110623 12.713266736729079 >100 0.39013094778867907 18.59526179211189 >500 0.0044586394032991895 0.7219281841609916 >1k 0.003901309477886791 2.830875626193358 >5k 0.0 0.0 >10k+ 5.573299254123987E-4 2.7974515299908695 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 17325 2.742408317293081 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3939 0.6235120555161584 No Hit CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT 3890 0.6157557491642185 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2612 0.41345861614831325 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGT 2023 0.3202246479586668 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1764 0.27922702866984095 No Hit AATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT 1745 0.27621948130888463 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCC 1559 0.24677717556478573 No Hit AAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT 650 0.10288977813797993 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7357410596697397 0.0 2 0.0 0.0 0.0 0.9654227028669841 0.0 3 0.0 0.0 0.0 1.2769412926755142 0.0 4 0.0 0.0 0.0 2.6881141728295006 0.0 5 0.0 0.0 0.0 2.885662546854422 0.0 6 0.0 0.0 0.0 3.9842087934353154 0.0 7 0.0 0.0 0.0 4.872701600648364 0.0 8 0.0 0.0 0.0 5.7032595481714115 0.0 9 0.0 0.0 0.0 7.157962719076082 0.0 10 1.58291966366123E-4 0.0 0.0 9.08959958464188 0.0 11 1.58291966366123E-4 0.0 0.0 10.800102573194206 0.0 12 1.58291966366123E-4 0.0 0.0 11.608974521325093 0.0 13 1.58291966366123E-4 0.0 0.0 11.953259548171411 0.0 14 1.58291966366123E-4 0.0 0.0 12.281082210515653 0.0 15 1.58291966366123E-4 0.0 0.0 12.582944990375848 0.0 16 1.58291966366123E-4 0.0 0.0 13.180338871441597 0.0 17 1.58291966366123E-4 0.0 0.0 14.02007775301388 0.0 18 1.58291966366123E-4 0.0 0.0 15.194287559517779 0.0 19 1.58291966366123E-4 0.0 0.0 15.622783912470874 0.0 20 1.58291966366123E-4 0.0 0.0 16.167466568736703 0.0 21 1.58291966366123E-4 0.0 0.0 16.64440026339783 0.0 22 1.58291966366123E-4 0.0 0.0 17.21156037888765 0.0 23 1.58291966366123E-4 0.0 0.0 17.75671791105258 0.0 24 1.58291966366123E-4 0.0 0.0 18.125538192685646 0.0 25 1.58291966366123E-4 0.0 0.0 18.4397477459224 0.0 26 1.58291966366123E-4 0.0 0.0 18.747783912470876 0.0 27 3.16583932732246E-4 0.0 0.0 19.133066558606018 0.0 28 3.16583932732246E-4 0.0 0.0 19.482733512308783 0.0 29 3.16583932732246E-4 0.0 0.0 19.857885472596493 0.0 30 3.16583932732246E-4 0.0 0.0 20.37834945800831 0.0 31 3.16583932732246E-4 0.0 0.0 20.738938557390334 0.0 32 3.16583932732246E-4 0.0 0.0 21.073409482321953 0.0 33 3.16583932732246E-4 0.0 0.0 21.416586465403707 0.0 34 3.16583932732246E-4 0.0 0.0 21.78144944787762 0.0 35 3.16583932732246E-4 0.0 0.0 22.15707628406443 0.0 36 3.16583932732246E-4 0.0 0.0 22.527796069293892 0.0 37 3.16583932732246E-4 0.0 0.0 22.8557770236045 0.0 38 3.16583932732246E-4 0.0 0.0 23.220006838212946 0.0 39 3.16583932732246E-4 0.0 0.0 23.567932580285685 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCGT 35 1.2107739E-7 45.000004 13 ATATCCG 55 1.8189894E-12 45.000004 1 GTCCGCA 35 1.2107739E-7 45.000004 36 CTATTCG 35 1.2107739E-7 45.000004 1 CCGGTGT 35 1.2107739E-7 45.000004 41 GTCGGAT 35 1.2107739E-7 45.000004 17 TATCCGG 70 0.0 45.000004 2 ACGCGGA 55 1.8189894E-12 45.000004 3 GCCCCGA 20 7.030872E-4 45.0 35 CGGGTTA 40 6.8066583E-9 45.0 6 AGCGTTG 20 7.030872E-4 45.0 1 AACGTCA 20 7.030872E-4 45.0 40 ACTATCG 25 3.8888043E-5 45.0 2 AATCCGT 20 7.030872E-4 45.0 28 AATCCCG 50 2.1827873E-11 45.0 1 TCGTTCA 20 7.030872E-4 45.0 16 ACCGGTC 20 7.030872E-4 45.0 16 TACCCGA 25 3.8888043E-5 45.0 34 ACGTTGA 20 7.030872E-4 45.0 17 ACTTGCG 20 7.030872E-4 45.0 1 >>END_MODULE