SRR3553357_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553357_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520097
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10200	1.9611726274137324	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2412	0.4637596448354826	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2146	0.41261533906175196	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	1347	0.25899014991434294	Illumina Single End Adapter 1 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1251	0.2405320545975078	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1241	0.23860933633533746	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1208	0.2322643660701754	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	619	0.11901626042834317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATAC	20	7.029721E-4	45.0	25
AGCGTGC	25	3.8878505E-5	45.0	12
CTATGCA	20	7.029721E-4	45.0	11
AGCGTAA	45	3.8380676E-10	45.0	37
ATTAGCG	50	2.1827873E-11	45.0	1
TCCGATA	40	6.8030204E-9	45.0	30
CCGATAT	40	6.8030204E-9	45.0	31
GACGTGA	20	7.029721E-4	45.0	10
TATGGCA	25	3.8878505E-5	45.0	18
CGTTGAC	20	7.029721E-4	45.0	15
ATTACCG	50	2.1827873E-11	45.0	1
ACTCTAT	25	3.8878505E-5	45.0	38
TTGTCGG	20	7.029721E-4	45.0	10
TCTTACC	35	1.21021E-7	45.0	4
ATAGCGC	25	3.8878505E-5	45.0	20
CCAATCG	20	7.029721E-4	45.0	11
ATTCGGA	25	3.8878505E-5	45.0	40
GTAGGTC	20	7.029721E-4	45.0	21
TCGATTG	25	3.8878505E-5	45.0	1
GCTTGTA	25	3.8878505E-5	45.0	25