SRR3553352_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553352_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	908603
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11881	1.3076117952505109	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2473	0.27217607690047246	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2240	0.2465323138928663	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	1761	0.1938140199845257	Illumina Single End Adapter 1 (95% over 21bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1415	0.15573358221357403	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1227	0.1350424772975656	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	999	0.10994900963347029	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	912	0.10037387065638127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCA	30	2.1649976E-6	45.000004	22
ATTACCG	60	0.0	45.000004	1
TGATTCG	35	1.2115561E-7	45.000004	1
TTAACGG	70	0.0	45.000004	2
TCCGTAT	65	0.0	45.000004	23
CGTCGAT	30	2.1649976E-6	45.000004	27
TATCCCG	30	2.1649976E-6	45.000004	1
CCTTACG	40	6.8121153E-9	45.0	1
TCGTTAA	25	3.890158E-5	45.0	38
ACACGTC	20	7.032506E-4	45.0	27
CGTATTT	25	3.890158E-5	45.0	9
CAACGAA	25	3.890158E-5	45.0	14
CTATCGA	20	7.032506E-4	45.0	1
TAGCGGA	25	3.890158E-5	45.0	44
TAGCGCA	20	7.032506E-4	45.0	23
ATAGCGC	25	3.890158E-5	45.0	36
CACGATA	25	3.890158E-5	45.0	35
TAACGTA	20	7.032506E-4	45.0	34
CACTGCG	25	3.890158E-5	45.0	1
TACGGAT	20	7.032506E-4	45.0	31