SRR3553351_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553351_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	902518
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11537	1.2783124547100446	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2399	0.26581187300419495	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2190	0.24265444013305	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	1626	0.1801626117152234	Illumina Single End Adapter 1 (95% over 21bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1396	0.15467835544554234	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1248	0.1382797905415737	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	944	0.1045962518199083	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	910	0.10082901393656414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	30	2.1649812E-6	45.000004	1
AACGCAC	30	2.1649812E-6	45.000004	3
CCGAAAT	30	2.1649812E-6	45.000004	45
GATTCGA	30	2.1649812E-6	45.000004	9
TATACGG	60	0.0	45.000004	2
AATACGA	35	1.2115379E-7	45.000004	20
AACCGCA	20	7.0324814E-4	45.0	28
CGAACAT	20	7.0324814E-4	45.0	22
TACGCTA	20	7.0324814E-4	45.0	18
ATATCGC	20	7.0324814E-4	45.0	18
GTTCGCA	40	6.8121153E-9	45.0	13
TACGAAC	20	7.0324814E-4	45.0	38
TCGTATC	20	7.0324814E-4	45.0	36
GCGATAT	20	7.0324814E-4	45.0	42
CGTAAGA	25	3.8901377E-5	45.0	28
GCTCGAT	20	7.0324814E-4	45.0	10
CAATCGA	40	6.8121153E-9	45.0	41
CGATCAC	20	7.0324814E-4	45.0	41
CGCCCAT	20	7.0324814E-4	45.0	16
CGATATG	55	1.8189894E-12	44.999996	1