SRR3553347_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553347_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684224
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15186	2.2194486016275374	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3309	0.4836135534561781	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3058	0.4469296604620709	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	2094	0.3060401272098026	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1544	0.22565709475259565	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	877	0.12817439902721917	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAA	30	2.1642081E-6	45.000004	45
ACTATGC	20	7.031282E-4	45.000004	40
CTCACGA	20	7.031282E-4	45.000004	24
TCGTTAC	70	0.0	45.000004	9
TACCCGA	20	7.031282E-4	45.000004	18
CTCGTAA	20	7.031282E-4	45.000004	34
CGTATAG	35	1.2109558E-7	45.000004	1
GTCGACA	20	7.031282E-4	45.000004	32
CGAAACG	20	7.031282E-4	45.000004	1
CTATCGC	40	6.8084773E-9	45.000004	39
TCCGACT	20	7.031282E-4	45.000004	24
GACCGTT	20	7.031282E-4	45.000004	31
GACCGTC	20	7.031282E-4	45.000004	27
GACGTAC	20	7.031282E-4	45.000004	10
CGTTGCA	20	7.031282E-4	45.000004	34
CGCATAC	20	7.031282E-4	45.000004	23
GATCCAT	20	7.031282E-4	45.000004	10
ATAGCGG	35	1.2109558E-7	45.000004	2
TGAACGT	40	6.8084773E-9	45.000004	36
CGACCGT	20	7.031282E-4	45.000004	23