SRR3553346_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553346_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335374
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16964	5.058233494546387	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3635	1.0838645810349044	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3410	1.016775301603583	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCT	2062	0.6148359741661548	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1669	0.49765336609278005	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	573	0.17085403161843196	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT	554	0.1651887146886759	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	520	0.15505077913016513	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGT	498	0.14849093847465814	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT	489	0.1458073672974053	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCC	451	0.13447673343789324	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTT	434	0.12940776565863782	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	420	0.12523332160513337	No Hit
CTGTCAGGGATTTTTCCCTAATTTTCTTGCATTTCCTATTTATATAAAGAA	407	0.12135705212687924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.0261327E-4	45.000004	1
TCACGAG	20	7.0261327E-4	45.000004	1
ATGGGTA	70	0.0	45.000004	5
TTAGGTA	20	7.0261327E-4	45.000004	40
AACCGTC	20	7.0261327E-4	45.000004	10
GATACGC	20	7.0261327E-4	45.000004	27
TCGCACG	20	7.0261327E-4	45.000004	1
AGTCATT	20	7.0261327E-4	45.000004	17
GTACACC	20	7.0261327E-4	45.000004	24
CACGGGT	35	1.208482E-7	45.000004	4
CCTAGCG	20	7.0261327E-4	45.000004	1
TTTGTCG	20	7.0261327E-4	45.000004	44
CGTGATC	20	7.0261327E-4	45.000004	12
TTGTCGT	20	7.0261327E-4	45.000004	45
GATCCGT	20	7.0261327E-4	45.000004	35
ACATTGA	20	7.0261327E-4	45.000004	21
CCGGAAG	20	7.0261327E-4	45.000004	1
GGTTTAC	20	7.0261327E-4	45.000004	9
GTCTACG	20	7.0261327E-4	45.000004	34
GGTCAAT	20	7.0261327E-4	45.000004	41