SRR3553345_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553345_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	329830
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16684	5.058363399326926	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3579	1.0851044477458085	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3320	1.006579146833217	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCT	1872	0.5675651092987296	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1663	0.5041991328866385	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	576	0.17463541824576295	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	505	0.1531091774550526	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT	495	0.15007731255495255	No Hit
CTGTCAGGGATTTTTCCCTAATTTTCTTGCATTTCCTATTTATATAAAGAA	459	0.13916259891459237	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGT	452	0.13704029348452232	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTT	443	0.13431161507443226	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCC	411	0.12460964739411211	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT	411	0.12460964739411211	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	398	0.12066822302398204	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGTT	30	2.1607775E-6	45.000004	37
AAGTACG	30	2.1607775E-6	45.000004	1
CCTTACT	30	2.1607775E-6	45.000004	12
GGCAATC	30	2.1607775E-6	45.000004	8
CACGACT	35	1.2084092E-7	45.000004	4
CCTCGTA	35	1.2084092E-7	45.000004	16
ACCCTCG	35	1.2084092E-7	45.000004	14
TACATGG	70	0.0	45.000004	2
TCTACGG	35	1.2084092E-7	45.000004	2
CTACGAA	60	0.0	45.000004	10
CGGGCTA	30	2.1607775E-6	45.000004	6
CGTACTG	30	2.1607775E-6	45.000004	1
TCGTAAT	35	1.2084092E-7	45.000004	18
CGTAATG	35	1.2084092E-7	45.000004	1
CGTAATA	35	1.2084092E-7	45.000004	19
ATAACGG	30	2.1607775E-6	45.000004	2
GCAATCA	30	2.1607775E-6	45.000004	9
ACGTAGG	35	1.2084092E-7	45.000004	2
GCTACGA	60	0.0	45.000004	9
CGTCCTA	35	1.2084092E-7	45.000004	36