##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553345_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 329830 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40724009338144 31.0 31.0 34.0 30.0 34.0 2 31.600084892217204 31.0 31.0 34.0 30.0 34.0 3 31.818354910105207 31.0 31.0 34.0 30.0 34.0 4 35.576554588727525 37.0 35.0 37.0 33.0 37.0 5 35.32914531728466 37.0 35.0 37.0 33.0 37.0 6 32.58550162204772 37.0 35.0 37.0 26.0 37.0 7 34.143131310068824 37.0 35.0 37.0 27.0 37.0 8 35.209517023921414 37.0 35.0 37.0 32.0 37.0 9 36.997228875481305 39.0 37.0 39.0 33.0 39.0 10 36.47454446229876 38.0 35.0 39.0 32.0 39.0 11 36.61537458690841 39.0 35.0 39.0 32.0 39.0 12 36.66879907831307 39.0 35.0 39.0 32.0 39.0 13 36.65338507716096 39.0 35.0 39.0 32.0 39.0 14 37.734393475426735 39.0 37.0 41.0 33.0 41.0 15 37.80535124154868 39.0 37.0 41.0 33.0 41.0 16 37.71977079101355 39.0 37.0 41.0 33.0 41.0 17 37.67005427038171 39.0 37.0 40.0 33.0 41.0 18 37.43908680229209 39.0 36.0 40.0 32.0 41.0 19 37.25615620167965 39.0 35.0 40.0 32.0 41.0 20 37.11774247339539 39.0 35.0 40.0 32.0 41.0 21 37.04509595852409 39.0 35.0 40.0 32.0 41.0 22 36.97218263954158 39.0 35.0 40.0 31.0 41.0 23 36.7576175605615 39.0 35.0 40.0 31.0 41.0 24 36.654036928114486 38.0 35.0 40.0 31.0 41.0 25 36.69941788193918 38.0 35.0 40.0 31.0 41.0 26 36.61672073492405 38.0 35.0 40.0 31.0 41.0 27 36.50238001394658 38.0 35.0 40.0 31.0 41.0 28 36.46341448625049 38.0 35.0 40.0 31.0 41.0 29 36.23981444986811 38.0 35.0 40.0 30.0 41.0 30 36.20345632598612 38.0 35.0 40.0 30.0 41.0 31 35.77784009944517 38.0 35.0 40.0 29.0 41.0 32 35.858081435891215 38.0 35.0 40.0 29.0 41.0 33 35.81886729527332 38.0 35.0 40.0 30.0 41.0 34 35.79245975199345 38.0 35.0 40.0 29.0 41.0 35 35.73218930964436 38.0 35.0 40.0 29.0 41.0 36 35.58204529606161 38.0 35.0 40.0 29.0 41.0 37 35.478755722645 38.0 34.0 40.0 28.0 41.0 38 35.42816299305703 38.0 34.0 40.0 27.0 41.0 39 35.35383985689597 38.0 34.0 40.0 27.0 41.0 40 35.19345420368069 38.0 34.0 40.0 26.0 41.0 41 35.16946608859109 38.0 34.0 40.0 26.0 41.0 42 35.044428948246065 38.0 34.0 40.0 26.0 41.0 43 35.01696631598096 38.0 34.0 40.0 26.0 41.0 44 34.82916350847406 37.0 34.0 40.0 25.0 41.0 45 34.658345208137526 37.0 33.0 40.0 24.0 41.0 46 34.36510020313495 37.0 33.0 40.0 23.0 41.0 47 34.362802049540676 37.0 33.0 40.0 23.0 41.0 48 34.31499863566079 37.0 33.0 40.0 23.0 41.0 49 34.18435557711548 37.0 33.0 40.0 23.0 41.0 50 34.05207227965922 36.0 33.0 40.0 23.0 41.0 51 33.00762817208865 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 3.0 12 1.0 13 2.0 14 7.0 15 15.0 16 37.0 17 113.0 18 247.0 19 471.0 20 748.0 21 1268.0 22 1619.0 23 2112.0 24 2606.0 25 3121.0 26 3364.0 27 4101.0 28 4981.0 29 6244.0 30 7751.0 31 10304.0 32 13288.0 33 17511.0 34 24291.0 35 38402.0 36 35980.0 37 44489.0 38 56141.0 39 50599.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.4454719097717 36.696176818360975 19.604038444046935 24.254312827820392 2 18.476184701209714 38.91610829821423 20.303489676500014 22.30421732407604 3 18.992814480186762 38.94945881211533 19.814753054603887 22.242973653094015 4 17.554497771579296 39.044659369978476 19.751993451171813 23.64884940727041 5 16.256253221356456 41.46742261164842 17.15792984264621 25.11839432434891 6 16.071612648940363 47.76733468756632 17.256162265409454 18.90489039808386 7 76.87384410150683 15.027741563835914 4.565685353060667 3.53272898159658 8 78.01473486341447 14.446229875996725 3.5215110814662096 4.017524179122578 9 71.1390716429676 18.025043204074827 7.0681866416032495 3.7676985113543338 10 24.923748597762486 52.585877573295335 10.394748809993025 12.095625018949157 11 17.097292544644212 35.574083618833946 32.386380862868755 14.942242973653094 12 20.58424036624928 31.948579571294307 30.74765788436467 16.719522178091744 13 20.57029378770882 34.14425613194676 26.878391898856986 18.407058181487432 14 15.792681078131157 36.874450474486856 27.70851650850438 19.624351938877606 15 14.575387320740987 39.47033320195252 27.850710972319074 18.103568504987418 16 16.914471091168178 39.911469544917075 24.57781281266107 18.596246551253675 17 16.861716641906437 38.17451414364976 25.572870872873903 19.3908983415699 18 17.359852044992873 38.47800382014977 24.740927144286452 19.4212169905709 19 16.311129976048267 40.76706181972531 25.540429918442836 17.381378285783587 20 17.72185671406482 39.151684200952005 25.519206864142134 17.607252220841037 21 17.108813631264592 40.03547281933117 25.54891914016311 17.306794409241125 22 17.262225995209654 37.373192250553316 25.501622047721558 19.86295970651548 23 16.852014674226115 39.37119121971925 23.47482036200467 20.301973744049963 24 13.623988115089592 39.88357638783616 26.49243549707425 20.0 25 16.286268683867448 40.64305854531122 24.591759391201528 18.478913379619804 26 19.094685140830126 38.776036139829614 22.89148955522542 19.237789164114847 27 14.927386835642602 39.84294939817482 24.432889670436285 20.796774095746294 28 18.3455113240154 37.24949216262923 26.4757602401237 17.929236273231663 29 19.145620471151805 38.65112330594549 22.601643270775853 19.601612952126853 30 17.433223175575296 39.22141709365431 24.301306733771945 19.044052996998452 31 19.43789224752145 40.26013400842858 21.605069278112968 18.696904465937 32 21.74514143649759 37.17672740502683 22.061364945578024 19.016766212897554 33 17.64878876997241 38.58715095655337 23.230755237546617 20.533305035927597 34 18.35187824030561 37.220386259588274 25.363369008276994 19.064366491829123 35 20.55968226055847 35.86787132765364 24.31070551496225 19.26174089682564 36 18.463754055119306 38.2515235121123 26.109814146681625 17.174908286086772 37 17.516296273838037 38.721159385137796 25.699906012188094 18.062638328836066 38 18.89245975199345 37.676985113543346 25.90425370645484 17.526301428008367 39 18.527423218021404 37.12912712609526 23.35657763090077 20.986872024982567 40 19.36391474395901 39.65800563926871 22.037110026377224 18.940969590395053 41 16.971166964800048 37.37864960737349 26.360246187429887 19.28993724039657 42 19.624958311857625 37.74035108995543 24.03541218203317 18.599278416153776 43 17.59542794773065 35.76569748052027 26.40936239881151 20.229512172937575 44 19.94936785616833 34.43743746778644 25.200254676651607 20.41293999939363 45 19.832944244004487 36.32022557074856 25.649880241336447 18.196949943910496 46 17.73459054664524 36.97510838917018 26.3878361580208 18.902464906163782 47 17.73671285207531 35.686565806627655 26.48970681866416 20.08701452263287 48 18.83242882697147 35.64260376557621 26.89324803686748 18.631719370584847 49 18.23969923900191 35.021677834035714 25.577721856714064 21.160901070248308 50 17.399569475184183 33.985386411181516 25.54497771579298 23.070066397841313 51 18.023830458114787 33.77679410605464 26.630688536518814 21.568686899311768 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 18825.0 1 14300.5 2 9776.0 3 5877.0 4 1978.0 5 1621.0 6 1264.0 7 1411.5 8 1559.0 9 1706.0 10 1853.0 11 2340.0 12 2827.0 13 2966.0 14 3105.0 15 3216.5 16 3328.0 17 3065.5 18 2803.0 19 2772.5 20 2742.0 21 2467.0 22 2192.0 23 2296.0 24 2400.0 25 2645.5 26 3596.0 27 4301.0 28 5034.0 29 5767.0 30 6803.0 31 7839.0 32 9148.5 33 10458.0 34 11244.0 35 12030.0 36 12626.0 37 13222.0 38 12930.5 39 12639.0 40 12909.5 41 13180.0 42 15383.5 43 17587.0 44 20333.0 45 23079.0 46 25032.0 47 26985.0 48 28249.5 49 29514.0 50 27516.0 51 25518.0 52 22800.0 53 20082.0 54 17572.0 55 15062.0 56 12462.5 57 9863.0 58 8522.5 59 7182.0 60 6519.0 61 5856.0 62 4767.0 63 3678.0 64 3166.0 65 2654.0 66 2231.5 67 1809.0 68 1503.5 69 1198.0 70 1088.0 71 978.0 72 775.0 73 572.0 74 595.5 75 412.5 76 206.0 77 229.0 78 252.0 79 160.5 80 69.0 81 56.5 82 44.0 83 29.0 84 14.0 85 17.0 86 20.0 87 13.5 88 7.0 89 4.0 90 1.0 91 0.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 329830.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.428308811833567 #Duplication Level Percentage of deduplicated Percentage of total 1 74.9989822501077 23.57091174729609 2 10.115894601487458 6.358509188870157 3 3.90025161222262 3.6773493633835272 4 2.2247731609643395 2.796834317562655 5 1.4385911093478965 2.260624281927196 6 0.9923102720664483 1.8711980200595348 7 0.8136116471096944 1.7899306668787622 8 0.6229367336899236 1.5662278429313474 9 0.4901633312940742 1.3864504089732523 >10 3.6517667031417975 23.477101233127513 >50 0.5101292468726961 11.187923675866617 >100 0.23360125982037355 11.209572256411073 >500 0.001996591964276697 0.33916109519649495 >1k 0.003993183928553394 3.273641875374864 >5k 0.0 0.0 >10k+ 9.982959821383485E-4 5.234564026140908 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 16684 5.058363399326926 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3579 1.0851044477458085 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3320 1.006579146833217 No Hit CTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCT 1872 0.5675651092987296 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1663 0.5041991328866385 No Hit AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 576 0.17463541824576295 No Hit ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 505 0.1531091774550526 No Hit AATCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT 495 0.15007731255495255 No Hit CTGTCAGGGATTTTTCCCTAATTTTCTTGCATTTCCTATTTATATAAAGAA 459 0.13916259891459237 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGT 452 0.13704029348452232 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTT 443 0.13431161507443226 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCC 411 0.12460964739411211 No Hit AAACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCT 411 0.12460964739411211 No Hit ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 398 0.12066822302398204 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6782281781523816 0.0 2 0.0 0.0 0.0 0.9489737137313161 0.0 3 0.0 0.0 0.0 1.2057726707697904 0.0 4 0.0 0.0 0.0 2.462480671861262 0.0 5 0.0 0.0 0.0 2.666525179637995 0.0 6 0.0 0.0 0.0 3.8077191280356546 0.0 7 0.0 0.0 0.0 4.743352636206531 0.0 8 0.0 0.0 0.0 5.592274808234545 0.0 9 0.0 0.0 0.0 6.976017948640209 0.0 10 0.0 0.0 0.0 9.103174362550405 0.0 11 0.0 0.0 0.0 10.701876724373163 0.0 12 0.0 0.0 0.0 11.511991025679896 0.0 13 0.0 0.0 0.0 11.81972531304005 0.0 14 0.0 0.0 0.0 12.156868689931176 0.0 15 0.0 0.0 0.0 12.448837279810812 0.0 16 0.0 0.0 0.0 13.01337052420944 0.0 17 0.0 0.0 0.0 13.834096352666526 0.0 18 0.0 0.0 0.0 14.949822635903343 0.0 19 0.0 0.0 0.0 15.384895249067702 0.0 20 0.0 0.0 0.0 15.9000090955947 0.0 21 0.0 0.0 0.0 16.388745717490828 0.0 22 0.0 0.0 0.0 16.933268653548797 0.0 23 0.0 0.0 0.0 17.429888124185187 0.0 24 0.0 0.0 0.0 17.78400994451687 0.0 25 0.0 0.0 0.0 18.105387623927477 0.0 26 0.0 0.0 0.0 18.394021162417 0.0 27 0.0 0.0 0.0 18.74814298274869 0.0 28 0.0 0.0 0.0 19.063456932359095 0.0 29 0.0 0.0 0.0 19.4272807203711 0.0 30 0.0 0.0 0.0 19.881454082406087 0.0 31 3.0318649001000517E-4 0.0 0.0 20.211017797046964 0.0 32 3.0318649001000517E-4 0.0 0.0 20.526634933147378 0.0 33 3.0318649001000517E-4 0.0 0.0 20.854379528848195 0.0 34 3.0318649001000517E-4 0.0 0.0 21.17515083527878 0.0 35 3.0318649001000517E-4 0.0 0.0 21.517448382500074 0.0 36 3.0318649001000517E-4 0.0 0.0 21.84307067277082 0.0 37 3.0318649001000517E-4 0.0 0.0 22.187793711912196 0.0 38 3.0318649001000517E-4 0.0 0.0 22.493102507352273 0.0 39 3.0318649001000517E-4 0.0 0.0 22.854803989934208 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGGTT 30 2.1607775E-6 45.000004 37 AAGTACG 30 2.1607775E-6 45.000004 1 CCTTACT 30 2.1607775E-6 45.000004 12 GGCAATC 30 2.1607775E-6 45.000004 8 CACGACT 35 1.2084092E-7 45.000004 4 CCTCGTA 35 1.2084092E-7 45.000004 16 ACCCTCG 35 1.2084092E-7 45.000004 14 TACATGG 70 0.0 45.000004 2 TCTACGG 35 1.2084092E-7 45.000004 2 CTACGAA 60 0.0 45.000004 10 CGGGCTA 30 2.1607775E-6 45.000004 6 CGTACTG 30 2.1607775E-6 45.000004 1 TCGTAAT 35 1.2084092E-7 45.000004 18 CGTAATG 35 1.2084092E-7 45.000004 1 CGTAATA 35 1.2084092E-7 45.000004 19 ATAACGG 30 2.1607775E-6 45.000004 2 GCAATCA 30 2.1607775E-6 45.000004 9 ACGTAGG 35 1.2084092E-7 45.000004 2 GCTACGA 60 0.0 45.000004 9 CGTCCTA 35 1.2084092E-7 45.000004 36 >>END_MODULE