SRR3553340_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553340_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	916210
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15240	1.6633741172875214	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3265	0.35635934993069274	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2786	0.3040787592364196	No Hit
CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT	2244	0.24492201569509173	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2164	0.2361903930321651	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1521	0.1660099758788924	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1211	0.13217493806005173	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1055	0.11514827386734483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	30	2.1650176E-6	45.000004	26
CGTATAG	35	1.2115743E-7	45.000004	1
CGAAATA	30	2.1650176E-6	45.000004	5
CTATCGC	35	1.2115743E-7	45.000004	17
GCGAAAT	30	2.1650176E-6	45.000004	4
TCCGAAC	30	2.1650176E-6	45.000004	23
ACTCTCG	30	2.1650176E-6	45.000004	37
TTCACGC	35	1.2115743E-7	45.000004	20
TAAACGG	120	0.0	45.000004	2
GCACGAG	70	0.0	45.000004	1
ATATGCG	60	0.0	45.000004	1
TAACGCG	70	0.0	45.000004	1
CCGTCTA	30	2.1650176E-6	45.000004	36
CATACGC	30	2.1650176E-6	45.000004	17
GTTCACG	35	1.2115743E-7	45.000004	19
ATAACGG	130	0.0	45.000004	2
ACCGTCA	30	2.1650176E-6	45.000004	39
GCGTGCA	35	1.2115743E-7	45.000004	19
GGCGATA	70	0.0	45.000004	8
CTCTAGG	60	0.0	45.000004	2