SRR3553339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	906079
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14969	1.6520634514209025	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3200	0.3531700878179497	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2712	0.2993116494257123	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2093	0.2309953105634277	No Hit
CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT	2061	0.22746360968524817	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1664	0.1836484456653338	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1141	0.12592720943758767	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1009	0.11135894331509724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.0324936E-4	45.000004	38
TCGCACT	20	7.0324936E-4	45.000004	30
GTCGAAC	40	6.8121153E-9	45.000004	13
CGTTCCA	20	7.0324936E-4	45.000004	17
AGTATCC	40	6.8121153E-9	45.000004	21
TCAATCG	20	7.0324936E-4	45.000004	16
CCGTAGA	20	7.0324936E-4	45.000004	24
TAACCGT	20	7.0324936E-4	45.000004	12
TGCGATA	20	7.0324936E-4	45.000004	26
CTACGCT	20	7.0324936E-4	45.000004	42
CTACGCC	20	7.0324936E-4	45.000004	41
TTGCGTA	40	6.8121153E-9	45.000004	22
TCGTACG	20	7.0324936E-4	45.000004	2
TTCGGTA	20	7.0324936E-4	45.000004	25
CGTAAGG	40	6.8121153E-9	45.000004	2
GCTAACG	40	6.8121153E-9	45.000004	1
CCACGCG	20	7.0324936E-4	45.000004	1
TCGACCT	40	6.8121153E-9	45.000004	35
CGATACG	20	7.0324936E-4	45.000004	1
GCGTAAT	40	6.8121153E-9	45.000004	24