SRR3553338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1369425
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12362	0.9027146430071015	No Hit
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	2832	0.20680212497946218	TruSeq Adapter, Index 13 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2628	0.1919053617394162	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2058	0.15028205268634645	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGT	1979	0.14451320809828944	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCC	1711	0.12494295050842508	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCT	1601	0.11691038209467478	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1540	0.11245595779250415	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGCGA	45	3.8562575E-10	45.000004	13
ACGAACG	65	0.0	45.000004	1
TCACGGT	20	7.0337596E-4	45.0	38
TCGCAAA	20	7.0337596E-4	45.0	12
GTCGATT	20	7.0337596E-4	45.0	35
CGAGTTA	35	1.2121563E-7	45.0	34
CGAAATT	20	7.0337596E-4	45.0	42
GCGAACT	20	7.0337596E-4	45.0	45
TAGTTCG	20	7.0337596E-4	45.0	21
TACGCGA	35	1.2121563E-7	45.0	21
GTATCGG	85	0.0	45.0	2
ACGCTAC	40	6.8175723E-9	45.0	39
CCGAACG	20	7.0337596E-4	45.0	1
GACGATA	20	7.0337596E-4	45.0	42
CGGTATC	20	7.0337596E-4	45.0	23
TTCGCTA	20	7.0337596E-4	45.0	24
TAATGCG	35	1.2121563E-7	45.0	1
TACGTCC	20	7.0337596E-4	45.0	20
ACGATAG	30	2.1658088E-6	44.999996	1
TGCGACA	30	2.1658088E-6	44.999996	30