SRR3553337_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553337_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1359179
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12399	0.9122418754262683	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2607	0.19180696582275034	No Hit
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	2581	0.18989404633238152	TruSeq Adapter, Index 13 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2045	0.15045847530016282	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGT	1781	0.13103498509026407	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCC	1595	0.11735025335147173	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCT	1572	0.11565805534076085	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1485	0.10925713243068058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	60	0.0	45.000004	1
ATCGCGC	35	1.2121382E-7	45.000004	12
CCGATAG	20	7.033743E-4	45.0	1
TCGTATC	25	3.891183E-5	45.0	45
GCGATAT	20	7.033743E-4	45.0	38
ACGTACG	80	0.0	45.0	18
CGTTTAG	20	7.033743E-4	45.0	1
TTCGACG	20	7.033743E-4	45.0	33
TAATGCG	40	6.8157533E-9	45.0	1
TCGCGGA	20	7.033743E-4	45.0	18
ATCGACG	25	3.891183E-5	45.0	1
TACGTAA	20	7.033743E-4	45.0	25
CTTACGA	20	7.033743E-4	45.0	40
CGTAAGG	255	0.0	42.35294	2
GTCAACG	70	0.0	41.785717	1
GCGTAAG	130	0.0	41.53846	1
CGATACG	55	6.184564E-11	40.90909	1
ACGCGAT	105	0.0	40.714287	22
TAAGCGG	205	0.0	40.609756	2
ATATCCG	50	1.0822987E-9	40.5	1