SRR3553328_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553328_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1275755
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22026	1.7265070487672007	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5083	0.3984307331736893	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3858	0.3024091616336993	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	3556	0.27873690481322827	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2052	0.16084593044902823	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1648	0.12917840807992131	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCG	30	2.1656906E-6	45.000004	9
CAGGTCG	25	3.891049E-5	45.0	32
ACTATCG	20	7.033578E-4	45.0	1
TCGCATA	25	3.891049E-5	45.0	28
CGTATCA	20	7.033578E-4	45.0	16
CGTATAG	45	3.8562575E-10	45.0	1
CGTATAA	25	3.891049E-5	45.0	27
CGAAACT	20	7.033578E-4	45.0	37
CGACGGT	25	3.891049E-5	45.0	28
ATAGCGC	20	7.033578E-4	45.0	10
ATTCGGC	20	7.033578E-4	45.0	36
CGACATA	20	7.033578E-4	45.0	22
ATATGCG	20	7.033578E-4	45.0	1
CGCGACT	25	3.891049E-5	45.0	32
CATTACG	35	1.2120654E-7	45.0	1
CGTTAGA	25	3.891049E-5	45.0	39
ATTCCGC	25	3.891049E-5	45.0	22
TACGCTA	25	3.891049E-5	45.0	12
GTAGCGT	25	3.891049E-5	45.0	26
CGCTATA	20	7.033578E-4	45.0	25