SRR3553326_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553326_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1397545
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	24774	1.772679949482843	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5468	0.39125752659127255	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4379	0.313335169887195	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	3500	0.25043916296076335	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2726	0.19505633092315453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	40	6.8175723E-9	45.000004	1
TCCGCGA	20	7.0338097E-4	45.000004	29
CGAAACG	25	3.891239E-5	45.000004	1
ACGCATA	20	7.0338097E-4	45.000004	37
CTATACG	25	3.891239E-5	45.000004	1
CGCGATA	20	7.0338097E-4	45.000004	11
AATATCG	40	6.8175723E-9	45.000004	13
TCTACCG	25	3.891239E-5	45.000004	38
CGTAGGC	20	7.0338097E-4	45.000004	33
TTGCGTA	20	7.0338097E-4	45.000004	36
CGTACTG	25	3.891239E-5	45.000004	1
AATTCGC	40	6.8175723E-9	45.000004	37
ACTCGAT	20	7.0338097E-4	45.000004	15
CTCGACG	25	3.891239E-5	45.000004	1
ATCGGCG	20	7.0338097E-4	45.000004	1
CAATACG	80	0.0	45.000004	1
GTGCCGA	40	6.8175723E-9	45.000004	5
CTATCGT	35	1.2121745E-7	45.0	14
CAATTCG	35	1.2121745E-7	45.0	1
TAAGTCG	35	1.2121745E-7	45.0	45