SRR3553325_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553325_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1382706
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	24520	1.7733343169119102	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5402	0.390683196572518	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4399	0.3181442765128668	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	3348	0.2421339026517568	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2779	0.20098271071362964	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	35	1.2121745E-7	45.000004	45
TAGGTCG	35	1.2121745E-7	45.000004	2
GTTCGTA	35	1.2121745E-7	45.000004	30
GTCACGC	35	1.2121745E-7	45.000004	45
AATTCGC	35	1.2121745E-7	45.000004	37
CGTACGT	35	1.2121745E-7	45.000004	15
TATAGCG	35	1.2121745E-7	45.000004	1
CGCGTAG	140	0.0	45.000004	1
AACGTCG	20	7.0337835E-4	45.0	43
GGTCGTA	20	7.0337835E-4	45.0	11
CGAAACG	25	3.8912185E-5	45.0	1
CGTCTAT	20	7.0337835E-4	45.0	19
CAATTCG	40	6.8175723E-9	45.0	1
AATATCG	55	1.8189894E-12	45.0	13
TACGCTC	80	0.0	45.0	42
TCGGACG	45	3.8562575E-10	45.0	43
AATTGCG	40	6.8175723E-9	45.0	1
TACTAGT	25	3.8912185E-5	45.0	25
CACGTTA	20	7.0337835E-4	45.0	29
CGGTATG	20	7.0337835E-4	45.0	1