##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553325_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1382706 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76983031823106 31.0 31.0 34.0 30.0 34.0 2 31.971267934036593 33.0 31.0 34.0 30.0 34.0 3 32.14427289676909 34.0 31.0 34.0 30.0 34.0 4 35.843874258157555 37.0 35.0 37.0 35.0 37.0 5 35.61850964702547 37.0 35.0 37.0 33.0 37.0 6 32.85054668165178 37.0 35.0 37.0 27.0 37.0 7 34.362646867808486 37.0 35.0 37.0 29.0 37.0 8 35.468712076175265 37.0 35.0 37.0 32.0 37.0 9 37.37652834369707 39.0 37.0 39.0 35.0 39.0 10 36.84241914043911 39.0 37.0 39.0 32.0 39.0 11 36.84761619606771 39.0 37.0 39.0 32.0 39.0 12 36.80435320306703 39.0 37.0 39.0 33.0 39.0 13 36.770831977296695 39.0 37.0 39.0 33.0 39.0 14 37.92781762717454 40.0 37.0 41.0 33.0 41.0 15 37.9704340619047 40.0 37.0 41.0 33.0 41.0 16 37.92109023899513 40.0 37.0 41.0 33.0 41.0 17 37.908599514285754 40.0 37.0 41.0 33.0 41.0 18 37.79212789992956 39.0 37.0 41.0 33.0 41.0 19 37.78842356943559 39.0 36.0 41.0 33.0 41.0 20 37.672898649459825 39.0 36.0 41.0 33.0 41.0 21 37.62425201018872 39.0 36.0 41.0 33.0 41.0 22 37.580423459506214 39.0 36.0 41.0 33.0 41.0 23 37.46546843652953 39.0 36.0 41.0 32.0 41.0 24 37.32540684715334 39.0 35.0 41.0 32.0 41.0 25 37.34498512337402 39.0 35.0 41.0 32.0 41.0 26 37.271229748044775 39.0 35.0 41.0 32.0 41.0 27 37.214779569915805 39.0 35.0 41.0 32.0 41.0 28 37.18168432045569 39.0 35.0 41.0 32.0 41.0 29 36.98018233811092 39.0 35.0 40.0 31.0 41.0 30 37.0153257453139 39.0 35.0 40.0 31.0 41.0 31 36.63343545193266 39.0 35.0 40.0 31.0 41.0 32 36.75801218769572 39.0 35.0 40.0 31.0 41.0 33 36.74518516589933 39.0 35.0 40.0 31.0 41.0 34 36.705447868165756 39.0 35.0 40.0 31.0 41.0 35 36.66271788796751 39.0 35.0 40.0 31.0 41.0 36 36.610557848161505 39.0 35.0 40.0 31.0 41.0 37 36.53124959318901 39.0 35.0 40.0 31.0 41.0 38 36.44341819591439 39.0 35.0 40.0 30.0 41.0 39 36.39501455840938 39.0 35.0 40.0 30.0 41.0 40 36.27166657264813 38.0 35.0 40.0 30.0 41.0 41 36.2178778424336 38.0 35.0 40.0 30.0 41.0 42 36.09754134284512 38.0 35.0 40.0 30.0 41.0 43 36.048218493302265 38.0 35.0 40.0 30.0 41.0 44 35.846777261399026 38.0 35.0 40.0 30.0 41.0 45 35.70719155048145 38.0 34.0 40.0 29.0 41.0 46 35.46356419947552 38.0 34.0 40.0 28.0 41.0 47 35.42120884700001 38.0 34.0 40.0 28.0 41.0 48 35.402078966895346 37.0 34.0 40.0 28.0 41.0 49 35.28319179926897 37.0 34.0 40.0 28.0 41.0 50 35.16619729718393 37.0 34.0 40.0 27.0 41.0 51 34.070177608255115 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 0.0 9 5.0 10 9.0 11 17.0 12 24.0 13 31.0 14 50.0 15 99.0 16 185.0 17 298.0 18 539.0 19 989.0 20 1677.0 21 2546.0 22 3788.0 23 5281.0 24 6752.0 25 7953.0 26 9918.0 27 12179.0 28 15374.0 29 19742.0 30 26031.0 31 34253.0 32 45965.0 33 65004.0 34 97125.0 35 130401.0 36 147470.0 37 199875.0 38 274226.0 39 274854.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.649725972115547 30.187039037944434 20.804567276051454 28.358667713888565 2 21.99838577398232 32.05598297830486 19.76631330159846 26.17931794611436 3 21.495169616679178 32.00600850795469 20.474417555141873 26.024404320224253 4 20.869512390920413 32.79395619893166 19.21109765922763 27.125433750920298 5 18.64243013337615 35.7718849849498 16.571346331034942 29.014338550639106 6 18.153967654729204 43.26429479585682 16.902363915394886 21.67937363401909 7 85.86257671551292 7.371993757168914 3.6706284633175814 3.09480106400059 8 86.84000792648618 7.003947332260076 3.117799445435255 3.038245295818489 9 80.81059892703149 9.98325023540796 5.554687692105191 3.6514631454553608 10 37.23929743560815 34.523029479874964 12.95213877715147 15.285534307365412 11 24.978918150351557 30.937813244464117 24.97761635517601 19.10565225000832 12 26.207017254571834 27.351439857786108 27.823774540647108 18.61776834699495 13 24.676250772036862 28.395045656849682 26.35238438250792 20.57631918860553 14 21.142527768014315 30.4289559747336 27.508884752073108 20.919631505178977 15 19.786418804865242 32.53996149579159 27.103592520752784 20.570027178590387 16 22.122273281521885 30.618511816684098 27.566453027613967 19.69276187418005 17 22.810055065935924 30.224429488264313 27.21243706181936 19.753078383980398 18 21.88874569141958 30.620102899676432 26.69258685505089 20.798564553853097 19 21.4823686307863 32.36053072742868 25.940293887493077 20.216806754291948 20 23.410182641863127 31.776820235104207 26.282955306478744 18.530041816553915 21 23.35333758586424 31.316852606410905 25.89436944657794 19.43544036114691 22 22.735635775067152 29.195722011765334 26.113866577566018 21.954775635601496 23 21.97090343138744 30.764023588528584 25.695194784719238 21.56987819536474 24 20.37078019477749 32.23020656596558 26.42962422959038 20.969389009666553 25 21.54311907231183 32.135898737692614 25.117848624364107 21.20313356563145 26 22.187796972024422 32.03580515308388 24.32447678682236 21.451921088069337 27 20.01285884345624 30.73299747017804 27.033295581273244 22.22084810509248 28 20.746492746831212 31.574463407260833 27.418554631280983 20.26048921462697 29 22.141510921338302 31.97896009708499 24.631194194572092 21.248334787004612 30 22.37901621892145 30.581916907860386 26.526969579939625 20.512097293278543 31 22.68689077793833 31.00637445704293 24.527990765932888 21.77874399908585 32 21.687762980705948 31.082095543087252 25.556047344844096 21.674094131362704 33 21.284712729965737 30.617065377600156 26.912011664084773 21.18621022834934 34 20.499296307385663 30.46012673699254 26.934069860114878 22.106507095506927 35 20.479769379752458 31.063002547179224 28.150163519938438 20.307064553129877 36 22.30965946484647 31.818694646584305 26.04378660394907 19.827859284620157 37 20.76312679629654 32.36689505939802 25.652597153697172 21.21738099060827 38 20.886291084294133 30.977662641226694 27.307468109634296 20.828578164844878 39 20.820261140112216 29.214815007673362 26.595747758381027 23.369176093833396 40 21.96887841666992 30.21061599501268 26.590685221587236 21.229820366730166 41 20.21579424693319 29.297551323274796 28.402567140086177 22.08408728970584 42 21.359204342788708 30.903171028403726 26.52783744338999 21.209787185417582 43 21.083368409481118 30.42353182816882 26.563058235083957 21.930041527266102 44 21.664692277317087 29.927764832147975 25.822119814335082 22.585423076199856 45 22.77302622538703 28.933844215617782 26.77619103410269 21.516938524892492 46 20.155043805407658 30.340506224750598 27.788264461136354 21.716185508705394 47 20.627089200451866 31.224135861130275 26.96704867122874 21.18172626718912 48 20.650015259932335 30.62451453888245 27.212726349636146 21.51274385154906 49 20.963386287468197 30.02048157742861 27.01102041938055 22.00511171572265 50 20.885929474523145 29.56579345139169 27.03040270310536 22.517874370979804 51 20.759510698586684 28.773578765117097 27.993007913468226 22.47390262282799 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 28422.0 1 21241.0 2 14060.0 3 8799.5 4 3539.0 5 3221.0 6 2903.0 7 3022.0 8 3141.0 9 3982.0 10 4823.0 11 4970.5 12 5118.0 13 5611.5 14 6105.0 15 6379.5 16 6654.0 17 6473.5 18 6293.0 19 6325.0 20 6357.0 21 6084.5 22 5812.0 23 7892.5 24 9973.0 25 10606.0 26 12296.0 27 13353.0 28 17201.5 29 21050.0 30 26875.0 31 32700.0 32 35024.0 33 37348.0 34 40975.5 35 44603.0 36 46320.5 37 48038.0 38 53594.0 39 59150.0 40 60061.5 41 60973.0 42 68233.0 43 75493.0 44 81012.5 45 86532.0 46 94858.5 47 103185.0 48 103804.0 49 104423.0 50 100610.5 51 96798.0 52 93002.0 53 89206.0 54 81508.5 55 73811.0 56 67671.5 57 61532.0 58 59775.5 59 58019.0 60 54470.5 61 50922.0 62 45740.5 63 40559.0 64 35327.5 65 30096.0 66 27779.0 67 25462.0 68 22003.0 69 18544.0 70 15094.5 71 11645.0 72 10214.0 73 8783.0 74 7782.0 75 5209.5 76 3638.0 77 3077.0 78 2516.0 79 1952.0 80 1388.0 81 988.5 82 589.0 83 489.5 84 390.0 85 390.5 86 391.0 87 303.5 88 216.0 89 133.5 90 51.0 91 49.0 92 47.0 93 35.0 94 23.0 95 16.0 96 9.0 97 5.0 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1382706.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.71813512946771 #Duplication Level Percentage of deduplicated Percentage of total 1 74.71644988164122 15.479855050419447 2 9.72823033970979 4.031015814973901 3 3.6131929724997516 2.245758607592789 4 1.855419846614599 1.537633564162301 5 1.2795108287547534 1.3254539124879103 6 0.9101323999541262 1.1313747628773807 7 0.7036485732205865 1.0204800356548889 8 0.54259215117898 0.8993198006651745 9 0.46278358767684974 0.8629211614669958 >10 4.122616654026577 18.348645545373866 >50 1.098659254241199 16.455430243947678 >100 0.9575697097235705 32.71488609207282 >500 0.007072154429272903 0.9060911273393113 >1k 0.0014144308858545806 0.8490208663272378 >5k 3.5360772146364515E-4 0.3957555198808991 >10k+ 3.5360772146364515E-4 1.7963578947574315 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 24520 1.7733343169119102 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5402 0.390683196572518 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4399 0.3181442765128668 No Hit CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT 3348 0.2421339026517568 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2779 0.20098271071362964 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2764145089411632 0.0 2 0.0 0.0 0.0 0.38214920597726487 0.0 3 0.0 0.0 0.0 0.4902705275018695 0.0 4 0.0 0.0 0.0 1.0066492804688776 0.0 5 0.0 0.0 0.0 1.0883730887115555 0.0 6 0.0 0.0 0.0 1.5985321536176165 0.0 7 0.0 0.0 0.0 1.973015232449993 0.0 8 0.0 0.0 0.0 2.2534074488719944 0.0 9 0.0 0.0 0.0 2.736735068770946 0.0 10 0.0 0.0 0.0 3.4352928243603484 0.0 11 0.0 0.0 0.0 4.1812937819030225 0.0 12 0.0 0.0 0.0 4.525907893652013 0.0 13 0.0 0.0 0.0 4.665995518931718 0.0 14 0.0 0.0 0.0 4.83175743795138 0.0 15 0.0 0.0 0.0 4.977341531750061 0.0 16 0.0 0.0 0.0 5.264387367958192 0.0 17 0.0 0.0 0.0 5.659988457416111 0.0 18 0.0 0.0 0.0 6.0612306593013985 0.0 19 0.0 0.0 0.0 6.284416209953526 0.0 20 0.0 0.0 0.0 6.500514209094341 0.0 21 0.0 0.0 0.0 6.763549156509049 0.0 22 0.0 0.0 0.0 7.081404145205127 0.0 23 0.0 0.0 0.0 7.384650099153399 0.0 24 0.0 0.0 0.0 7.611307103606985 0.0 25 0.0 0.0 0.0 7.819594331694518 0.0 26 0.0 0.0 0.0 8.006112651568735 0.0 27 0.0 0.0 0.0 8.205214991473241 0.0 28 0.0 0.0 0.0 8.401279809301471 0.0 29 0.0 0.0 0.0 8.609060783709625 0.0 30 0.0 0.0 0.0 8.85857152568948 0.0 31 0.0 0.0 0.0 9.074163271150917 0.0 32 0.0 0.0 0.0 9.28317371878042 0.0 33 0.0 0.0 0.0 9.509686079325613 0.0 34 0.0 0.0 0.0 9.724409961336683 0.0 35 0.0 0.0 0.0 9.957720585576398 0.0 36 0.0 0.0 0.0 10.170130165053164 0.0 37 0.0 0.0 0.0 10.392013920529743 0.0 38 0.0 0.0 0.0 10.617875383487162 0.0 39 0.0 0.0 0.0 10.874329033069937 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAC 35 1.2121745E-7 45.000004 45 TAGGTCG 35 1.2121745E-7 45.000004 2 GTTCGTA 35 1.2121745E-7 45.000004 30 GTCACGC 35 1.2121745E-7 45.000004 45 AATTCGC 35 1.2121745E-7 45.000004 37 CGTACGT 35 1.2121745E-7 45.000004 15 TATAGCG 35 1.2121745E-7 45.000004 1 CGCGTAG 140 0.0 45.000004 1 AACGTCG 20 7.0337835E-4 45.0 43 GGTCGTA 20 7.0337835E-4 45.0 11 CGAAACG 25 3.8912185E-5 45.0 1 CGTCTAT 20 7.0337835E-4 45.0 19 CAATTCG 40 6.8175723E-9 45.0 1 AATATCG 55 1.8189894E-12 45.0 13 TACGCTC 80 0.0 45.0 42 TCGGACG 45 3.8562575E-10 45.0 43 AATTGCG 40 6.8175723E-9 45.0 1 TACTAGT 25 3.8912185E-5 45.0 25 CACGTTA 20 7.0337835E-4 45.0 29 CGGTATG 20 7.0337835E-4 45.0 1 >>END_MODULE