SRR3553323_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553323_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1241125
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22401	1.8048947527444859	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4916	0.39609225501057505	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4278	0.34468727968576895	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT	3556	0.2865142511834022	TruSeq Adapter, Index 20 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2462	0.19836841575183806	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1651	0.13302447376372242	No Hit
ACGAATGGGGACATTGTTGGGGTTTTGAGTTTGTTTTCTTCTGCTTTGATT	1456	0.11731292174438512	No Hit
CAAGTGGGGGCAATGTTTTCTGTTTTGTTTTTGTTTCTGTTTTTAGTTTGA	1424	0.11473461577198106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	90	0.0	45.000004	1
CGGGTTA	45	3.8562575E-10	45.000004	6
GTCGAAC	30	2.1656433E-6	45.000004	37
AGATACG	30	2.1656433E-6	45.000004	1
TACGACT	30	2.1656433E-6	45.000004	20
TGTTCGT	30	2.1656433E-6	45.000004	25
TATAGCG	30	2.1656433E-6	45.000004	10
CGCACGT	30	2.1656433E-6	45.000004	42
CGGTATA	30	2.1656433E-6	45.000004	14
TCGGTAT	30	2.1656433E-6	45.000004	13
ATACCGA	30	2.1656433E-6	45.000004	29
TGCGTAC	30	2.1656433E-6	45.000004	17
TCCGCGT	20	7.033504E-4	45.0	38
GTCGAGT	20	7.033504E-4	45.0	14
CGAAACT	35	1.212029E-7	45.0	10
GCGCGAA	35	1.212029E-7	45.0	14
CGCATTA	35	1.212029E-7	45.0	35
CGCATAG	75	0.0	45.0	1
GAATCGT	35	1.212029E-7	45.0	40
ACGCTAG	35	1.212029E-7	45.0	1