SRR3553320_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553320_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1308289
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16960	1.2963496597464323	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3928	0.30023947308278215	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3437	0.26270953894743443	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT	2324	0.1776365925265748	Illumina Single End Adapter 2 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1934	0.14782666520929244	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1808	0.13819576561447813	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGT	1725	0.1318516015956719	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC	1433	0.10953237396324512	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT	1322	0.10104801003448015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATT	70	0.0	45.000004	42
ATCACCG	65	0.0	45.000004	1
ACGTAAG	35	1.2121018E-7	45.000004	1
GTCGATA	40	6.8157533E-9	45.0	31
ACCGCGT	20	7.0336444E-4	45.0	25
CGCATAT	25	3.891102E-5	45.0	16
TAACGTA	20	7.0336444E-4	45.0	45
TCGATAT	40	6.8157533E-9	45.0	32
CGCTATA	20	7.0336444E-4	45.0	37
CGTAGCG	40	6.8157533E-9	45.0	1
AGCGATC	20	7.0336444E-4	45.0	24
GAACGTT	50	2.1827873E-11	45.0	38
GGACGTA	25	3.891102E-5	45.0	9
CTCGCTA	25	3.891102E-5	45.0	1
GCGATAC	25	3.891102E-5	45.0	29
TCGTACT	40	6.8157533E-9	45.0	29
TATAGCG	25	3.891102E-5	45.0	1
CCGCGTA	20	7.0336444E-4	45.0	18
TGTGTCG	25	3.891102E-5	45.0	11
TATCGCG	80	0.0	45.0	1