SRR3553317_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553317_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	599606
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	21377	3.5651744645650645	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4367	0.7283115912782727	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4286	0.7148027204530975	No Hit
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT	3123	0.5208420195928659	TruSeq Adapter, Index 10 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1970	0.328549080562903	No Hit
CAGAGAGAGGGAAAAGGATCGTGAAAAAGACAAGGAGCGGGGTAAAAACAA	980	0.16344065936631721	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	949	0.15827059769248472	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	888	0.1480972505278466	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCC	884	0.1474301457957392	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	840	0.14009199374255762	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGT	805	0.13425482733661773	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT	663	0.1105726093468044	RNA PCR Primer, Index 35 (95% over 22bp)
AGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	636	0.10606965240507933	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCGC	45	3.8380676E-10	45.000004	18
CCCGTTC	45	3.8380676E-10	45.000004	16
GTAAGCG	45	3.8380676E-10	45.000004	1
TACAACG	55	1.8189894E-12	45.000004	1
CTTCGAT	20	7.030585E-4	45.0	21
CAGGTCG	20	7.030585E-4	45.0	23
CTATGCG	20	7.030585E-4	45.0	1
CGAACAC	20	7.030585E-4	45.0	29
ACTGCCG	20	7.030585E-4	45.0	1
TCCGCTC	35	1.2106284E-7	45.0	11
GTCGATG	20	7.030585E-4	45.0	1
TACTTCG	25	3.888566E-5	45.0	18
TTGTGCG	35	1.2106284E-7	45.0	1
CTCCGGA	35	1.2106284E-7	45.0	3
GCGAATT	20	7.030585E-4	45.0	23
CGTGCCT	25	3.888566E-5	45.0	23
CGTGAAT	35	1.2106284E-7	45.0	27
CACGCAT	25	3.888566E-5	45.0	43
GGATCAC	100	0.0	45.0	8
ACTTCGT	25	3.888566E-5	45.0	19