SRR3553313_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553313_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1525802
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16365	1.0725506979280404	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGT	7231	0.47391470190758694	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCC	6246	0.4093584881917837	No Hit
AATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	5812	0.38091443057487145	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	4533	0.2970896616992244	Illumina Single End Adapter 1 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3640	0.23856306388378049	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2946	0.19307878741802673	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2752	0.1803641625846604	No Hit
AATGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	1745	0.11436608419703213	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1572	0.10302778473222608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	20	7.034013E-4	45.000004	19
CGTATAG	40	6.8175723E-9	45.000004	1
CTATCGA	20	7.034013E-4	45.000004	1
TCGATTG	20	7.034013E-4	45.000004	41
TTGCGAC	20	7.034013E-4	45.000004	40
TACTCGC	65	0.0	45.000004	45
CCGAACG	20	7.034013E-4	45.000004	1
ATTGCGT	20	7.034013E-4	45.000004	14
CAATCGT	20	7.034013E-4	45.000004	24
TCGACAC	30	2.1659707E-6	45.000004	33
GTAACGA	20	7.034013E-4	45.000004	29
ACAACGT	25	3.891409E-5	45.0	34
GTCGAAC	35	1.2122837E-7	45.0	39
CGACATA	45	3.8562575E-10	45.0	25
ATCGTTA	35	1.2122837E-7	45.0	28
AATTGCG	35	1.2122837E-7	45.0	1
CGCTATA	35	1.2122837E-7	45.0	36
ACTCGAT	25	3.891409E-5	45.0	21
TCGTACC	25	3.891409E-5	45.0	42
CGAGACG	45	3.8562575E-10	45.0	1