SRR3553311_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553311_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	761154
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22505	2.956694703043011	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5077	0.667013508435875	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3969	0.5214450689348016	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	3639	0.4780898477837599	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2383	0.31307724849373453	No Hit
AAATCAAGGGAGAATTTTTTTCTTGTTCTGAGTATCCTTGACATTACAATT	1458	0.19155124981278426	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1250	0.16422432254182465	No Hit
AACACTGGGGTCACTCCCTGGAATTCACCATCCCACGTTTCTTCACTAACA	977	0.12835773049869015	No Hit
TCTACCGGGTGGTAATGTGGCCAGCTCTCCTTGGTCCTGTCCTCAGCCGAT	785	0.1031328745562659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATG	75	0.0	45.000004	36
CGCGACG	35	1.2112105E-7	45.000004	1
TACATCG	55	1.8189894E-12	45.000004	2
TCACTAG	55	1.8189894E-12	45.000004	1
TTACGCG	35	1.2112105E-7	45.000004	1
ACGTAAG	35	1.2112105E-7	45.000004	1
TCGAAAG	35	1.2112105E-7	45.000004	1
TATTTCG	20	7.031784E-4	45.0	39
TCGTTAC	25	3.8895603E-5	45.0	15
CGAACCG	25	3.8895603E-5	45.0	1
TCACCGG	50	2.1827873E-11	45.0	2
CTCGTCA	45	3.8380676E-10	45.0	36
GTCGAGA	20	7.031784E-4	45.0	25
CTCCGCT	20	7.031784E-4	45.0	17
CGAGTCG	25	3.8895603E-5	45.0	1
CGAAACG	25	3.8895603E-5	45.0	1
ACGCAGT	20	7.031784E-4	45.0	29
TCTTCGC	25	3.8895603E-5	45.0	22
CATGACG	25	3.8895603E-5	45.0	1
GCTATCG	20	7.031784E-4	45.0	1