SRR3553310_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553310_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1352696
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13684	1.01160940817449	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	3532	0.26110818690969734	Illumina Single End Adapter 1 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3199	0.23649068231147277	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2464	0.18215474873881493	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1603	0.11850408369655858	No Hit
AACTTAGGAGATCTTGACAAATTCATTCTTGTTTCCCCTTCCTAGTTCCAA	1424	0.10527125089450994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCCG	30	2.165787E-6	45.000004	1
TCGCAAT	35	1.2121382E-7	45.000004	29
GTCGATT	25	3.891172E-5	45.000004	18
CGTATCG	25	3.891172E-5	45.000004	1
TACTTCG	25	3.891172E-5	45.000004	1
CGAAACG	25	3.891172E-5	45.000004	1
CTATCGA	35	1.2121382E-7	45.000004	20
TTCGTTG	25	3.891172E-5	45.000004	26
ATTCGCG	25	3.891172E-5	45.000004	1
TTCCGTA	30	2.165787E-6	45.000004	29
TCTAGCG	55	1.8189894E-12	45.000004	1
TAGCCGA	30	2.165787E-6	45.000004	28
ATCGTAG	30	2.165787E-6	45.000004	1
TTATACG	55	1.8189894E-12	45.000004	1
ACGATAG	30	2.165787E-6	45.000004	1
AGATTAC	35	1.2121382E-7	45.000004	21
CGTACTC	25	3.891172E-5	45.000004	45
CGTCGTT	25	3.891172E-5	45.000004	25
CGGTCGA	25	3.891172E-5	45.000004	12
GCTACGA	70	0.0	45.000004	9