SRR3553305_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553305_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1606816
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13863	0.8627621333120904	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	3048	0.18969191245295042	Illumina Single End Adapter 2 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2842	0.1768715272937287	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2737	0.17033686495529046	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCGTT	35	1.2123382E-7	45.000004	20
CTCCGAT	25	3.891502E-5	45.0	11
TAGGTCG	40	6.8175723E-9	45.0	2
ACCGAAC	40	6.8175723E-9	45.0	25
CGCGAAA	20	7.034125E-4	45.0	20
CCGTCGA	20	7.034125E-4	45.0	30
AATTCGC	20	7.034125E-4	45.0	43
TCGTACA	25	3.891502E-5	45.0	34
CGCACGA	20	7.034125E-4	45.0	40
CGATACG	20	7.034125E-4	45.0	1
GTGCGAT	30	2.1660435E-6	44.999996	15
ACGAACG	85	0.0	42.35294	1
CTCACGA	80	0.0	42.1875	24
TATACGG	145	0.0	41.89655	2
ATAACGG	180	0.0	41.25	2
TACGGGT	290	0.0	41.12069	4
CGAACCG	55	6.184564E-11	40.909092	27
CGTAGAT	55	6.184564E-11	40.909092	21
TCAACCG	110	0.0	40.909092	1
TTCTACG	45	1.9290383E-8	40.0	1