SRR3553302_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553302_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367651
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	27054	7.35860911571028	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6638	1.805516644861567	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5642	1.5346075490070747	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	2678	0.7284081914641874	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2649	0.720520276022641	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	749	0.20372581605925186	No Hit
AAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	606	0.16483023301990202	No Hit
TAGTAAGGGATCAGATATTTATCTCTTTTTCTAAAAAAAATAAAATAAATA	571	0.15531033507320802	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	540	0.14687842546327903	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	494	0.1343665595904812	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	470	0.127838629569891	No Hit
ACACACGGGATCGGGGTGGGACGAATGGGCCACCATGCCTTGTGGGAGCCA	435	0.11831873162319699	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	434	0.11804673453900574	No Hit
GCAAACGGGAAAGAATTTTGGTACCCAAAAAAAAAAAAAAAAAAAAAAAAA	430	0.1169587462022407	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	380	0.10335889199267784	No Hit
AATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	373	0.10145491240333904	No Hit
AGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	369	0.10036692406657402	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGA	25	3.8856124E-5	45.000004	16
AGGTACC	25	3.8856124E-5	45.000004	19
CAGCGCG	50	2.1827873E-11	45.000004	1
GTACCTT	25	3.8856124E-5	45.000004	21
CTGTACG	25	3.8856124E-5	45.000004	1
CATTGCG	25	3.8856124E-5	45.000004	1
AACTTAC	25	3.8856124E-5	45.000004	24
GCACGAA	25	3.8856124E-5	45.000004	21
CGATTCT	25	3.8856124E-5	45.000004	18
GAATAGA	25	3.8856124E-5	45.000004	9
CACGACC	25	3.8856124E-5	45.000004	27
CGACACG	25	3.8856124E-5	45.000004	1
CCTCGCG	25	3.8856124E-5	45.000004	1
ACGGGCC	25	3.8856124E-5	45.000004	5
CACCTAG	25	3.8856124E-5	45.000004	1
GTTACGG	50	2.1827873E-11	45.000004	2
GTTCGTC	25	3.8856124E-5	45.000004	44
GTGCTAG	25	3.8856124E-5	45.000004	31
AAGTTCG	25	3.8856124E-5	45.000004	42
GAGCGTT	25	3.8856124E-5	45.000004	33