SRR3553300_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553300_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	702686
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15920	2.2655923129249764	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4027	0.5730866987530703	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2547	0.36246630785300976	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	2194	0.31223049840184663	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1533	0.21816287787148173	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1022	0.14544191858098782	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	986	0.14031871988341876	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCATC	20	7.0314115E-4	45.000004	37
ACTATCG	40	6.8084773E-9	45.000004	34
GCCCATA	20	7.0314115E-4	45.000004	9
GATCGCG	20	7.0314115E-4	45.000004	9
TAGACTA	20	7.0314115E-4	45.000004	44
ACACCGT	20	7.0314115E-4	45.000004	36
CGTGATC	55	1.8189894E-12	45.000004	39
CGGTTGA	20	7.0314115E-4	45.000004	17
CGCATGA	20	7.0314115E-4	45.000004	32
TAGCGGA	20	7.0314115E-4	45.000004	10
TAGCGAG	40	6.8084773E-9	45.000004	1
CGATTTC	20	7.0314115E-4	45.000004	30
CAATTGC	20	7.0314115E-4	45.000004	40
CGATTAT	20	7.0314115E-4	45.000004	36
CGACACT	20	7.0314115E-4	45.000004	17
TAACGCG	20	7.0314115E-4	45.000004	1
ATCGTCG	20	7.0314115E-4	45.000004	22
ATCGTCC	20	7.0314115E-4	45.000004	26
TACGCTT	20	7.0314115E-4	45.000004	14
CTAACGC	20	7.0314115E-4	45.000004	35