SRR3553299_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553299_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	697282
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15573	2.2333862052942712	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3886	0.5573067998313451	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2534	0.3634110732816852	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	2047	0.29356845580410795	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1526	0.2188497623630038	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	997	0.14298375693048151	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	980	0.14054571894871803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCT	25	3.889222E-5	45.0	10
GTTTGCG	20	7.031376E-4	45.0	1
CTTCGAC	25	3.889222E-5	45.0	36
CGGAACC	25	3.889222E-5	45.0	44
TCGTTGC	25	3.889222E-5	45.0	13
GGTACGC	20	7.031376E-4	45.0	18
CTCCGTA	45	3.8380676E-10	45.0	18
CACGGTT	20	7.031376E-4	45.0	37
TTTACGT	25	3.889222E-5	45.0	10
CGTGATC	20	7.031376E-4	45.0	39
GACGTAT	25	3.889222E-5	45.0	26
TAAGTAG	20	7.031376E-4	45.0	43
TAAGTAA	25	3.889222E-5	45.0	35
TGACGTA	25	3.889222E-5	45.0	25
GCGCATT	20	7.031376E-4	45.0	13
CCGTCGG	25	3.889222E-5	45.0	2
ATCGTCA	40	6.8084773E-9	45.0	21
ATACTCG	25	3.889222E-5	45.0	44
CATTACG	25	3.889222E-5	45.0	1
GGCCATA	40	6.8084773E-9	45.0	32