##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553299_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 697282 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.702836155242785 31.0 31.0 34.0 30.0 34.0 2 31.904319916475686 33.0 31.0 34.0 30.0 34.0 3 32.058449809402795 33.0 31.0 34.0 30.0 34.0 4 35.78482450428951 37.0 35.0 37.0 35.0 37.0 5 35.55128484601639 37.0 35.0 37.0 33.0 37.0 6 32.67948692207744 37.0 35.0 37.0 26.0 37.0 7 34.21428632891714 37.0 35.0 37.0 27.0 37.0 8 35.3308962514449 37.0 35.0 37.0 32.0 37.0 9 37.20804638582381 39.0 37.0 39.0 34.0 39.0 10 36.740219882343155 39.0 37.0 39.0 32.0 39.0 11 36.790519474186915 39.0 37.0 39.0 32.0 39.0 12 36.73352244859325 39.0 35.0 39.0 32.0 39.0 13 36.70525985182466 39.0 35.0 39.0 32.0 39.0 14 37.85826824728015 40.0 37.0 41.0 33.0 41.0 15 37.87768076617495 40.0 37.0 41.0 33.0 41.0 16 37.839334731141776 40.0 37.0 41.0 33.0 41.0 17 37.835524221190276 39.0 37.0 41.0 33.0 41.0 18 37.72771561577669 39.0 37.0 41.0 33.0 41.0 19 37.65424032170628 39.0 36.0 41.0 33.0 41.0 20 37.5377408279577 39.0 36.0 41.0 32.0 41.0 21 37.48798190688989 39.0 36.0 41.0 32.0 41.0 22 37.43173350237063 39.0 36.0 41.0 32.0 41.0 23 37.24689150157325 39.0 35.0 41.0 32.0 41.0 24 37.13497408509039 39.0 35.0 41.0 32.0 41.0 25 37.17988848127443 39.0 35.0 41.0 32.0 41.0 26 37.104356630459414 39.0 35.0 41.0 32.0 41.0 27 37.023048063767604 39.0 35.0 41.0 31.0 41.0 28 36.96208277282362 39.0 35.0 41.0 31.0 41.0 29 36.73953006100832 39.0 35.0 40.0 31.0 41.0 30 36.765106513577 39.0 35.0 40.0 31.0 41.0 31 36.43643748153545 39.0 35.0 40.0 30.0 41.0 32 36.49850562613118 39.0 35.0 40.0 30.0 41.0 33 36.49707005200192 39.0 35.0 40.0 30.0 41.0 34 36.41450804695948 39.0 35.0 40.0 30.0 41.0 35 36.371674587899875 39.0 35.0 40.0 30.0 41.0 36 36.28595460660106 38.0 35.0 40.0 30.0 41.0 37 36.23505697838177 38.0 35.0 40.0 30.0 41.0 38 36.10681474640103 38.0 35.0 40.0 30.0 41.0 39 36.03599978201072 38.0 35.0 40.0 30.0 41.0 40 35.86495133963017 38.0 35.0 40.0 29.0 41.0 41 35.79262335755118 38.0 35.0 40.0 29.0 41.0 42 35.6608158535571 38.0 35.0 40.0 29.0 41.0 43 35.627677180824975 38.0 35.0 40.0 28.0 41.0 44 35.421571186406645 38.0 34.0 40.0 28.0 41.0 45 35.22242650749625 38.0 34.0 40.0 27.0 41.0 46 34.98540475732917 37.0 34.0 40.0 26.0 41.0 47 34.94378027828052 37.0 34.0 40.0 26.0 41.0 48 34.87958960650067 37.0 34.0 40.0 26.0 41.0 49 34.721571760062645 37.0 33.0 40.0 26.0 41.0 50 34.61567486325475 37.0 33.0 40.0 26.0 41.0 51 33.47678270771367 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 10.0 11 15.0 12 16.0 13 24.0 14 36.0 15 56.0 16 111.0 17 209.0 18 394.0 19 769.0 20 1183.0 21 1790.0 22 2427.0 23 3191.0 24 3968.0 25 4996.0 26 6014.0 27 7543.0 28 9116.0 29 11592.0 30 14695.0 31 18984.0 32 25099.0 33 33658.0 34 49999.0 35 67254.0 36 72465.0 37 98484.0 38 131493.0 39 131663.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.569726452138447 31.54849831201723 20.651472431526983 27.230302804317336 2 24.922054491583033 31.705393226843658 19.231673842147078 24.14087843942623 3 21.0197595807722 33.43984212986998 20.224528956720523 25.3158693326373 4 20.366795643656367 35.03905163190789 17.779893931006395 26.814258793429346 5 18.450641203989203 36.6745448756744 15.045992869455974 29.828821050880418 6 17.680938271746584 45.01392549929584 16.747886794725808 20.557249434231775 7 83.26229559919803 9.299967588436242 4.062631761611515 3.3751050507542146 8 83.84656423082771 9.02748099047444 3.7359346720552087 3.390020106642649 9 77.26873775602984 11.625138753043963 6.707329315829176 4.39879417509702 10 35.07146319566545 34.16078430247733 13.071038690228631 17.69671381162858 11 26.186535720124716 32.713737053301244 21.95252422979512 19.147202996778923 12 26.21823021388764 26.023330589345488 28.83367131232414 18.924767884442737 13 23.60795201941252 27.801377348045698 27.074842029480184 21.5158286030616 14 20.554381154253228 31.25206157623458 26.830321161309197 21.363236108202994 15 19.487094174236535 32.420312011496065 27.60733820749711 20.485255606770288 16 21.097920210187556 30.30093993534897 26.88739993288225 21.713739921581226 17 21.356639064252338 30.326754455155875 27.423194632874505 20.89341184771728 18 22.165494018202107 30.124110474671657 25.876618068442898 21.833777438683345 19 20.883516281791298 32.98937875923944 25.581902300647368 20.545202658321884 20 22.84785782509802 31.114527551263333 25.559673130813643 20.477941492824996 21 23.491930094280363 30.20972863203123 26.340132112975812 19.958209160712595 22 22.33931178490195 28.723099119151218 24.620885093835778 24.316704002111052 23 20.93471507940833 32.851557906270344 24.69373940529083 21.51998760903049 24 19.610717041311837 32.81513075054282 26.008845775453832 21.565306432691507 25 22.242650749624975 31.393611193175786 24.094699131771648 22.26903892542759 26 21.860882684480597 31.43849977484002 22.60634865090451 24.09426888977487 27 20.311724668068297 30.25189234771585 26.1601475443221 23.276235439893757 28 20.473782486856106 32.00885724857375 26.511511841693892 21.00584842287625 29 21.221686491261785 33.6024736046535 24.19379820503039 20.982041699054328 30 21.286222790779053 31.533870084126654 26.02060572336587 21.159301401728424 31 23.34335319139172 31.430898832896876 21.184972507536408 24.040775468175 32 22.581107787093313 31.457717250696277 24.420965979331175 21.540208982879236 33 22.657117206524763 30.85537845520177 23.11632883108986 23.371175507183608 34 20.676856709337113 31.718300486747115 24.581589658129708 23.023253145786065 35 21.96342369371359 30.541301797551064 24.435163965224973 23.060110543510373 36 23.230486374235962 31.56298312590889 24.848052868136563 20.35847763171859 37 23.109014717144568 31.061607785659174 23.576114111650668 22.25326338554559 38 22.398828594456763 31.86056717368296 23.910698971147973 21.82990526071231 39 21.79534248697084 28.710478687245622 25.20314592948047 24.291032896303076 40 22.437120132170342 30.844622405282223 25.10462051221744 21.613636950329994 41 20.878353377829917 30.551771019472753 27.174658172733558 21.395217429963772 42 20.506767706609377 31.995089504676734 24.805602324454096 22.692540464259796 43 21.105951394127484 29.488929873422805 25.124555058068328 24.280563674381384 44 21.83764961665438 28.215413562948704 26.640584440728425 23.306352379668485 45 22.909095602639965 29.347236842482666 25.831155830782954 21.912511724094415 46 21.570756164650746 28.957437593398367 27.45861789060954 22.013188351341352 47 21.16647210167479 30.210015460029084 26.99725505606053 21.626257382235593 48 21.11297868007492 30.601392263101584 26.824010945356395 21.461618111467097 49 21.2196786952768 30.625055572924587 26.346585742927537 21.808679988871074 50 20.937439945387947 29.01193491299073 26.823724117358545 23.22690102426278 51 22.512699309605008 28.441290611259145 26.42030053837615 22.625709540759694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 17718.0 1 13454.5 2 9191.0 3 5774.0 4 2357.0 5 1955.5 6 1554.0 7 1537.5 8 1521.0 9 1566.0 10 1611.0 11 1730.5 12 1850.0 13 1850.0 14 1850.0 15 1968.0 16 2086.0 17 2049.5 18 2013.0 19 2083.5 20 2154.0 21 2623.5 22 3093.0 23 3790.5 24 4488.0 25 4986.5 26 5473.5 27 5462.0 28 8509.0 29 11556.0 30 13183.0 31 14810.0 32 16636.5 33 18463.0 34 18363.0 35 18263.0 36 21258.5 37 24254.0 38 26559.0 39 28864.0 40 28955.5 41 29047.0 42 32240.5 43 35434.0 44 35963.5 45 36493.0 46 41323.0 47 46153.0 48 49860.5 49 53568.0 50 53225.5 51 52883.0 52 49490.5 53 46098.0 54 40942.5 55 35787.0 56 34670.5 57 33554.0 58 32749.5 59 31945.0 60 29720.5 61 27496.0 62 24614.0 63 21732.0 64 20492.5 65 19253.0 66 17246.0 67 15239.0 68 13329.5 69 11420.0 70 10063.0 71 8706.0 72 7600.0 73 6494.0 74 4855.0 75 2614.5 76 2013.0 77 1589.5 78 1166.0 79 891.0 80 616.0 81 373.0 82 130.0 83 96.5 84 63.0 85 56.0 86 49.0 87 38.5 88 28.0 89 27.0 90 26.0 91 19.5 92 13.0 93 12.0 94 11.0 95 7.5 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 697282.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.337299906855055 #Duplication Level Percentage of deduplicated Percentage of total 1 77.33531130210076 16.501267306429213 2 9.02360987323782 3.850789402154673 3 3.3158099326101707 2.1225129289869615 4 1.7011584450810937 1.4519251172709802 5 1.096659861524759 1.1699880180581956 6 0.7543272530524298 0.9657184095776303 7 0.5672298690556483 0.8472207682516543 8 0.43323098959621154 0.7395183643166374 9 0.3874614973953203 0.7440643955054779 >10 3.3495961819992472 15.854918359171059 >50 1.0450345683350903 16.22424006595163 >100 0.9803581618257525 34.857704316399285 >500 0.006808042790456615 0.9562811460076784 >1k 0.002723217116182646 1.4516356512311606 >5k 0.0 0.0 >10k+ 6.808042790456615E-4 2.262215750687768 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 15573 2.2333862052942712 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3886 0.5573067998313451 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2534 0.3634110732816852 No Hit CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 2047 0.29356845580410795 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1526 0.2188497623630038 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 997 0.14298375693048151 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 980 0.14054571894871803 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4341399892726329E-4 0.0 0.0 0.35853499731815824 0.0 2 1.4341399892726329E-4 0.0 0.0 0.4788593424181321 0.0 3 1.4341399892726329E-4 0.0 0.0 0.5922998155695974 0.0 4 1.4341399892726329E-4 0.0 0.0 1.138993979480325 0.0 5 1.4341399892726329E-4 0.0 0.0 1.2261896908281011 0.0 6 1.4341399892726329E-4 0.0 0.0 1.7562478308632663 0.0 7 1.4341399892726329E-4 0.0 0.0 2.178171815707275 0.0 8 1.4341399892726329E-4 0.0 0.0 2.5005664852957628 0.0 9 1.4341399892726329E-4 0.0 0.0 3.0121242194693107 0.0 10 1.4341399892726329E-4 0.0 0.0 3.7996104875789136 0.0 11 1.4341399892726329E-4 0.0 0.0 4.50305615231714 0.0 12 1.4341399892726329E-4 0.0 0.0 4.855424347681426 0.0 13 1.4341399892726329E-4 0.0 0.0 4.993818856646235 0.0 14 1.4341399892726329E-4 0.0 0.0 5.155446433437261 0.0 15 1.4341399892726329E-4 0.0 0.0 5.288391210442834 0.0 16 1.4341399892726329E-4 0.0 0.0 5.599025932119286 0.0 17 1.4341399892726329E-4 0.0 0.0 5.967456495363425 0.0 18 1.4341399892726329E-4 0.0 0.0 6.469118663610993 0.0 19 1.4341399892726329E-4 0.0 0.0 6.6683207081209614 0.0 20 1.4341399892726329E-4 0.0 0.0 6.883441706511856 0.0 21 1.4341399892726329E-4 0.0 0.0 7.1349898606302755 0.0 22 1.4341399892726329E-4 0.0 0.0 7.387541912741186 0.0 23 1.4341399892726329E-4 0.0 0.0 7.6726489426085855 0.0 24 1.4341399892726329E-4 0.0 0.0 7.878448031069209 0.0 25 2.8682799785452657E-4 0.0 0.0 8.062017949696106 0.0 26 2.8682799785452657E-4 0.0 0.0 8.229095258446367 0.0 27 2.8682799785452657E-4 0.0 0.0 8.406211547121538 0.0 28 2.8682799785452657E-4 0.0 0.0 8.595087783708744 0.0 29 2.8682799785452657E-4 0.0 0.0 8.790274236248749 0.0 30 2.8682799785452657E-4 0.0 0.0 9.010988380597807 0.0 31 2.8682799785452657E-4 0.0 0.0 9.195705611216122 0.0 32 2.8682799785452657E-4 0.0 0.0 9.38085308383122 0.0 33 2.8682799785452657E-4 0.0 0.0 9.608164272130931 0.0 34 2.8682799785452657E-4 0.0 0.0 9.805501934654846 0.0 35 2.8682799785452657E-4 0.0 0.0 10.035681402933102 0.0 36 2.8682799785452657E-4 0.0 0.0 10.231728339466672 0.0 37 2.8682799785452657E-4 0.0 0.0 10.435089389945531 0.0 38 2.8682799785452657E-4 0.0 0.0 10.65107087232999 0.0 39 2.8682799785452657E-4 0.0 0.0 10.862463106748775 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCT 25 3.889222E-5 45.0 10 GTTTGCG 20 7.031376E-4 45.0 1 CTTCGAC 25 3.889222E-5 45.0 36 CGGAACC 25 3.889222E-5 45.0 44 TCGTTGC 25 3.889222E-5 45.0 13 GGTACGC 20 7.031376E-4 45.0 18 CTCCGTA 45 3.8380676E-10 45.0 18 CACGGTT 20 7.031376E-4 45.0 37 TTTACGT 25 3.889222E-5 45.0 10 CGTGATC 20 7.031376E-4 45.0 39 GACGTAT 25 3.889222E-5 45.0 26 TAAGTAG 20 7.031376E-4 45.0 43 TAAGTAA 25 3.889222E-5 45.0 35 TGACGTA 25 3.889222E-5 45.0 25 GCGCATT 20 7.031376E-4 45.0 13 CCGTCGG 25 3.889222E-5 45.0 2 ATCGTCA 40 6.8084773E-9 45.0 21 ATACTCG 25 3.889222E-5 45.0 44 CATTACG 25 3.889222E-5 45.0 1 GGCCATA 40 6.8084773E-9 45.0 32 >>END_MODULE