SRR3553295_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553295_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	566089
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14960	2.642693993347336	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3414	0.6030853805673666	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2707	0.4781933582881844	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	2271	0.40117366703822194	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1490	0.26320949532670657	No Hit
GACGAGGGGGAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAG	1069	0.18883956409681163	No Hit
GCAGAGGGACATATTGTTGATTTATTATTTTTAAGAGTACAGACTAACTGA	585	0.10334064078263312	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.030248E-4	45.000004	34
GGTACGA	40	6.8048394E-9	45.000004	9
GATAATC	20	7.030248E-4	45.000004	9
CGAGTAT	20	7.030248E-4	45.000004	34
ACGTTTA	20	7.030248E-4	45.000004	38
CTATCGG	20	7.030248E-4	45.000004	2
TAGACCC	20	7.030248E-4	45.000004	32
GACCGTA	20	7.030248E-4	45.000004	14
TAGCGAT	20	7.030248E-4	45.000004	45
ATTACCG	20	7.030248E-4	45.000004	1
TAAACCG	40	6.8048394E-9	45.000004	1
CCGTGAT	20	7.030248E-4	45.000004	21
TCCTCGA	40	6.8048394E-9	45.000004	22
TAGCCCG	20	7.030248E-4	45.000004	1
ATCGTAG	20	7.030248E-4	45.000004	1
CTGCGCT	20	7.030248E-4	45.000004	15
TGCGCAG	40	6.8048394E-9	45.000004	1
CATAGCG	20	7.030248E-4	45.000004	1
CGTAGCA	20	7.030248E-4	45.000004	17
CGCTAAT	20	7.030248E-4	45.000004	10