SRR3553293_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553293_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615359
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16851	2.738401485961853	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3758	0.6107004204049994	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3147	0.5114087873907751	No Hit
CTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCT	1994	0.32403848810206726	TruSeq Adapter, Index 22 (95% over 23bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1723	0.2799991549648254	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGT	1356	0.22035917245055323	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCC	1066	0.17323221079077417	No Hit
AATCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCT	894	0.14528104732359484	No Hit
CTGTCTGGGGCTCCTGTTTTTTAGCTGCTGTTCCTTGTCAGCTCTGACCAT	810	0.13163047911869333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACAG	85	0.0	45.000004	1
TAGAGTC	20	7.030729E-4	45.0	38
AAACTCG	20	7.030729E-4	45.0	1
AGCCGTC	25	3.8886858E-5	45.0	13
GTCGCTA	20	7.030729E-4	45.0	33
TCGCATC	25	3.8886858E-5	45.0	15
TACCCTA	35	1.2107012E-7	45.0	19
GGTACGT	20	7.030729E-4	45.0	8
ACCGGTA	25	3.8886858E-5	45.0	32
AGATCAC	25	3.8886858E-5	45.0	37
TCCGCGT	25	3.8886858E-5	45.0	11
CTCGTCG	20	7.030729E-4	45.0	30
AGTTTCG	20	7.030729E-4	45.0	45
GATCGAG	20	7.030729E-4	45.0	1
CGAGTAT	25	3.8886858E-5	45.0	13
CAACGGC	20	7.030729E-4	45.0	16
TTTACCG	20	7.030729E-4	45.0	1
CCTAGTA	20	7.030729E-4	45.0	12
AGATACG	20	7.030729E-4	45.0	1
ACGCATG	25	3.8886858E-5	45.0	1