SRR3553286_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553286_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	819235
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12431	1.517391224740154	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2847	0.34751933205978747	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2355	0.28746330418011923	No Hit
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT	2110	0.25755735533760155	Illumina PCR Primer Index 8 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1328	0.16210244923617764	No Hit
AGAGAAGGAGAAGGAGAAGGAGAAGAAGAAAAGAAGAAGAAGAAGAAGAAG	1166	0.14232790347092106	No Hit
GTATGCGGGGAAGAAAAGGAAGAGAAAGAGGAAGAGAAAGAAAAAGAAGAA	1096	0.13378334665877312	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	897	0.10949239229280974	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	832	0.10155816096724384	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	55	1.8189894E-12	45.0	6
CTATGCG	35	1.211356E-7	45.0	1
AGGTACG	45	3.8380676E-10	45.0	1
GTCGCAA	20	7.0320995E-4	45.0	21
GCGACCG	50	2.1827873E-11	45.0	32
CGAGTTG	25	3.889821E-5	45.0	1
CTGTACG	20	7.0320995E-4	45.0	28
CGAAACG	40	6.8102963E-9	45.0	1
GCGAATC	25	3.889821E-5	45.0	28
CGACGAT	25	3.889821E-5	45.0	40
GTTTACG	20	7.0320995E-4	45.0	25
CGCATTA	55	1.8189894E-12	45.0	42
CGTTGTC	20	7.0320995E-4	45.0	45
TAGCGAT	20	7.0320995E-4	45.0	45
TAAACCG	50	2.1827873E-11	45.0	1
ATTCGGT	45	3.8380676E-10	45.0	40
GTTAGCG	45	3.8380676E-10	45.0	1
CGATTAC	20	7.0320995E-4	45.0	38
CGCGAGA	20	7.0320995E-4	45.0	23
CCTAACG	40	6.8102963E-9	45.0	1