SRR3553285_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553285_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	811896
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12274	1.5117699803915772	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2771	0.3412998709194281	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2372	0.29215564555066165	No Hit
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT	1956	0.24091755594312572	Illumina PCR Primer Index 8 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1295	0.15950318760038232	No Hit
AGAGAAGGAGAAGGAGAAGGAGAAGAAGAAAAGAAGAAGAAGAAGAAGAAG	1189	0.14644732822923132	No Hit
GTATGCGGGGAAGAAAAGGAAGAGAAAGAGGAAGAGAAAGAAAAAGAAGAA	1055	0.12994275128834235	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	910	0.11208332101648487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCATGCG	45	3.8380676E-10	45.000004	1
GCCGACA	35	1.2113378E-7	45.000004	27
ACTACCG	35	1.2113378E-7	45.000004	1
GGTTATC	35	1.2113378E-7	45.000004	9
CGATAGG	70	0.0	45.000004	2
GATAGCC	45	3.8380676E-10	45.000004	9
TAATCCG	35	1.2113378E-7	45.000004	1
CGGGTAC	95	0.0	45.0	6
GGTAATC	25	3.8897902E-5	45.0	35
CGTATCC	20	7.0320617E-4	45.0	45
CGAAATG	55	1.8189894E-12	45.0	1
CTCCGAC	20	7.0320617E-4	45.0	30
ACGTTGC	25	3.8897902E-5	45.0	17
CGGCCAA	25	3.8897902E-5	45.0	6
TAGCGTC	20	7.0320617E-4	45.0	28
GGCGTAT	20	7.0320617E-4	45.0	43
ATTCGCG	25	3.8897902E-5	45.0	4
CCGCTCA	25	3.8897902E-5	45.0	33
CGTTCGT	20	7.0320617E-4	45.0	40
ATACTAC	20	7.0320617E-4	45.0	42