SRR3553281_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553281_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1698325
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11304	0.6655969852648933	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2592	0.15262096477411566	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2387	0.14055024803850852	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	2279	0.13419104117292038	TruSeq Adapter, Index 22 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2215	0.13042262228960888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCGC	20	7.034238E-4	45.000004	30
TCGTACC	20	7.034238E-4	45.000004	39
TCCCGAT	20	7.034238E-4	45.000004	38
GTATACG	20	7.034238E-4	45.000004	1
TTACGCT	40	6.8175723E-9	45.000004	15
TCGAACG	45	3.8562575E-10	45.000004	1
TAGACGC	25	3.8915954E-5	45.0	13
ATTACGC	35	1.2123928E-7	45.0	22
TTGCGAT	25	3.8915954E-5	45.0	16
CGCGTAG	55	1.8189894E-12	45.0	1
TAGTGCG	35	1.2123928E-7	45.0	1
TCGACCA	30	2.166118E-6	44.999996	18
CGGTCTA	95	0.0	42.63158	31
ATTACGG	75	0.0	42.0	2
CGGTAGT	190	0.0	41.44737	12
ACGCATG	50	1.0822987E-9	40.5	1
CATACCG	50	1.0822987E-9	40.5	1
CGATACG	45	1.9292202E-8	40.000004	1
TTCGTAC	85	0.0	39.705883	33
AATTCGT	85	0.0	39.705883	31