SRR3553280_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553280_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380877
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15132	3.97293614473964	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3865	1.0147632962872528	No Hit
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT	2840	0.7456475450079684	TruSeq Adapter, Index 10 (95% over 24bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2833	0.7438096813406953	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1586	0.41640739661360493	No Hit
AAACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCT	632	0.16593283395951974	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTT	492	0.12917556061405652	No Hit
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	485	0.12733769694678335	RNA PCR Primer, Index 10 (95% over 23bp)
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	394	0.10344546927223223	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACACGG	150	0.0	45.000004	2
CGGGTTC	20	7.02734E-4	45.0	6
CGGGTTA	20	7.02734E-4	45.0	6
CTAGACG	20	7.02734E-4	45.0	1
CGGGTAC	25	3.8858772E-5	45.0	6
TCGTTTC	25	3.8858772E-5	45.0	30
CGGAACG	25	3.8858772E-5	45.0	1
AACCGGA	20	7.02734E-4	45.0	26
ACTATCG	20	7.02734E-4	45.0	1
TTGGCGA	35	1.209064E-7	45.0	27
AGTCCGG	25	3.8858772E-5	45.0	2
GAAGCGG	20	7.02734E-4	45.0	2
CAAACGA	20	7.02734E-4	45.0	22
CGAACGA	20	7.02734E-4	45.0	26
ACGCCCT	20	7.02734E-4	45.0	40
TCCGCCT	20	7.02734E-4	45.0	12
AGTTTCG	20	7.02734E-4	45.0	21
GATCGGC	20	7.02734E-4	45.0	28
CTTCCGA	20	7.02734E-4	45.0	28
CAAAACG	25	3.8858772E-5	45.0	1