SRR3553278_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553278_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1413853
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11387	0.8053878302765562	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	2511	0.17759979290633468	TruSeq Adapter, Index 16 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2510	0.17752906419549982	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2079	0.14704498982567496	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	40	6.8175723E-9	45.0	34
CGCATAG	75	0.0	45.0	1
GCACGAC	20	7.033838E-4	45.0	28
ATGTCGA	20	7.033838E-4	45.0	38
CCCGTTA	35	1.2121927E-7	45.0	44
CGTACGA	20	7.033838E-4	45.0	23
CGTAATC	20	7.033838E-4	45.0	42
TTCGAAT	20	7.033838E-4	45.0	36
TATCGCG	90	0.0	45.0	1
CTAGCGT	20	7.033838E-4	45.0	44
CTATCGT	30	2.165858E-6	44.999996	19
CGACAAT	25	3.8912644E-5	44.999996	43
TACTCGA	25	3.8912644E-5	44.999996	44
TATACGG	140	0.0	43.392857	2
CGGCACG	90	0.0	42.5	1
TCTAGCG	70	0.0	41.785713	1
CCTTACG	60	3.6379788E-12	41.249996	1
CGAAACG	60	3.6379788E-12	41.249996	1
CTAACGG	295	0.0	41.18644	2
TATACGC	45	1.9288564E-8	40.0	31