SRR3553276_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553276_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1305896
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11669	0.8935627339389968	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2469	0.18906559174696913	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2152	0.16479107065187426	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	1669	0.1278049706867928	TruSeq Adapter, Index 15 (95% over 22bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1532	0.11731408933023764	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGA	20	7.033639E-4	45.000004	1
GTATGCG	45	3.8562575E-10	45.000004	1
CACTACG	40	6.8157533E-9	45.000004	1
CGCTAAG	40	6.8157533E-9	45.000004	1
GCGATAT	20	7.033639E-4	45.000004	37
TTACGTC	20	7.033639E-4	45.000004	45
CAATACG	40	6.8157533E-9	45.000004	1
TACGTCG	20	7.033639E-4	45.000004	24
TGCGTAT	20	7.033639E-4	45.000004	26
ATTACGG	85	0.0	45.0	2
TACGGTA	25	3.8910992E-5	45.0	22
CCGCTAA	25	3.8910992E-5	45.0	24
CGTTAGA	25	3.8910992E-5	45.0	25
GTTACCG	25	3.8910992E-5	45.0	38
CGATATG	25	3.8910992E-5	45.0	1
TATCGAT	25	3.8910992E-5	45.0	13
CATTACG	60	0.0	44.999996	1
CCCGATC	185	0.0	43.783783	41
CGCATAG	155	0.0	43.548386	1
TATACGG	125	0.0	43.199997	2