SRR3553275_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553275_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1298968
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11616	0.894248357157374	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2455	0.18899618774288512	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2131	0.1640533100122559	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	1637	0.12602311989209897	TruSeq Adapter, Index 15 (95% over 22bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1456	0.1120889814067783	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.2120836E-7	45.000004	1
CGAGTTA	30	2.1657215E-6	45.000004	43
GTATACG	30	2.1657215E-6	45.000004	1
CGATATG	35	1.2120836E-7	45.000004	1
CAATACG	30	2.1657215E-6	45.000004	1
CTTCGAA	25	3.891088E-5	45.0	26
TACCCGA	25	3.891088E-5	45.0	10
GTCGATC	20	7.033627E-4	45.0	8
TCCGCAA	20	7.033627E-4	45.0	16
TCCGAAT	20	7.033627E-4	45.0	40
CACGCTA	25	3.891088E-5	45.0	38
CGTTAGA	20	7.033627E-4	45.0	25
AACGGTT	25	3.891088E-5	45.0	26
TACGAAC	20	7.033627E-4	45.0	27
ACGTCTA	20	7.033627E-4	45.0	29
ACCCGAT	25	3.891088E-5	45.0	11
CCAACGT	25	3.891088E-5	45.0	36
CACGTAT	20	7.033627E-4	45.0	33
CACCGTA	20	7.033627E-4	45.0	25
TGAATCG	20	7.033627E-4	45.0	21